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Peptide record

TPDB87795

YYK Selfassembly modified_plain modified
3 amino acids
Basic Information
TPDB87795
YYK
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 3-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
Acetylation-YYK-Amidation
Physicochemical Analysis
C106H164N24O34S2
RQGHFPSWV
A
2382.73
4.07
1
2
12
-1
0.04
0.200
78.40
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
4470
187.60
9
Residue Composition
number
4
A
0
R
2
N
1
D
1
C
1
E
0
Q
0
G
0
H
3
I
1
L
1
K
1
M
0
F
0
P
0
S
3
T
0
W
3
Y
0
V
Amino Acid Distribution
A: 4 R: 0 N: 2 D: 1 C: 1 E: 1 Q: 0 G: 0 H: 0 I: 3 L: 1 K: 1 M: 1 F: 0 P: 0 S: 0 T: 3 W: 0 Y: 3 V: 0
Chemical Descriptors
3
C106H164N24O34S2
2382.73
4.07
-1
0.04
0.200
Self-Assembly Information 1 records
Record 1 Selfassembly

Source

23871602
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Spherical aggregates
pH: 5-6 solvent: Water and HFIP (9.5:0.5, v/v) concentration: 5mg/ml
Selfassembly; Nanostructure=Spherical aggregates; Trigger=pH: 5-6; solvent: Water and HFIP (9.5:0.5, v/v); concentration: 5mg/ml
AFM (Atomic Force Microscopy), Transmission Electron Microscopy (TEM), DLS (Dynamic Light Scattering) and CD (Circular Dichroism spectroscopy)
Selfassembly
Evidence Records 1 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Spherical aggregates Trigger=pH: 5-6 solvent: Water and HFIP (9.5:0.5, v/v) concentration: 5mg/ml
Spherical aggregates

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Acetylation C-terminal: Amidation
pH: 5-6 solvent: Water and HFIP (9.5:0.5, v/v) concentration: 5mg/ml
AFM (Atomic Force Microscopy), Transmission Electron Microscopy (TEM), DLS (Dynamic Light Scattering) and CD (Circular Dichroism spectroscopy)
23871602
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID 1073 nanostr_class=Other but nanostr gives explicit morphology low-detail seed row.
Additional Detail Fields 5 fields
pH: 5-6 solvent: Water and HFIP (9.5:0.5, v/v) concentration: 5mg/ml
N-terminal: Acetylation C-terminal: Amidation
SAPdb ID 1073 nanostr_class=Other but nanostr gives explicit morphology low-detail seed row.
23871602
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly