TPDB

3D PDB MODEL

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TPDB ID TPDB87705

Peptide_Name

Asp-Val-Val (DVV) Aspâˆ’Valâˆ’Val

Activity

Selfassembly

Activity_category_statistics

Self-assembling and biomaterial peptides

Database_Source

SAPdb

Sequence_Type

standard

Has_Modification No

Description A 3-aa standard natural selfassembly peptide sequence curated from SAPdb, with an available 3D structural model.

Sequence

DVV

FASTA

>TPDB87705|Selfassembly|length=3
DVV

Formula C14H25N3O6

Absent Amino Acids ARNCEQGHILKMFPSTWY

Common Amino Acids V

Mass 331.37

PI 3.10

Basic Residues 0

Acidic Residues 1

Hydrophobic Residues 2

Net Charge -1

Boman Index 1.37

Hydrophobicity 1.633

Aliphatic Index 193.33

Half Life

Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour

Extinction Coefficient Cystines 0

Absorbance 280nm 0.00

Polar Residues 0

number

0

A

0

R

0

N

1

D

0

C

0

E

0

Q

0

G

0

H

0

I

0

L

0

K

0

M

0

F

0

P

0

S

0

T

0

W

0

Y

2

V

Amino Acid Distribution

A: 0 R: 0 N: 0 D: 1 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 0 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 2

Length

3

Formula

C14H25N3O6

Mass

331.37

PI

3.10

Net Charge

-1

Boman Index

1.37

Hydrophobicity

1.633

Record 1 Selfassembly

Source

PMID 30642185

DOI 10.1016/j.compbiomed.2021.104391

Title

SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Activity Endpoint Nanostructure formation

Nanostructure Nanostructure nanostructures

Source Annotation Selfassembly; Nanostructure=Nanostructure; nanostructures

Assembly Evidence UVâˆ’Vis Absorption and pHotoluminescence (PL) Spectroscopy, FT-IR, CD, TEM HPLC

Source Activity Label Selfassembly

Record 2 Selfassembly

Source

PMID 28683194

DOI 10.1016/j.compbiomed.2021.104391

Title

SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Activity Endpoint Nanostructure formation

Nanostructure Nanostructure Nanostructures

Source Annotation Selfassembly; Nanostructure=Nanostructure; Nanostructures

Assembly Evidence Transmission Electron Microscopy (TEM)

Source Activity Label Selfassembly

Evidence 1 Selfassembly

Activity

Activity Endpoint Nanostructure formation

Activity Raw

Selfassembly Nanostructure=Nanostructure nanostructures

Detail Activity Nanostructure nanostructures

Source & Reference

Database Source SAPdb

DOI 10.1016/j.compbiomed.2021.104391

Other

Modification None specified

Evidence Text

UVâˆ’Vis Absorption and pHotoluminescence (PL) Spectroscopy, FT-IR, CD, TEM HPLC

PMID 30642185

Reference Title SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Notes SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.

Evidence 2 Selfassembly

Activity

Activity Endpoint Nanostructure formation

Activity Raw

Selfassembly Nanostructure=Nanostructure Nanostructures

Detail Activity Nanostructure Nanostructures

Source & Reference

Database Source SAPdb

DOI 10.1016/j.compbiomed.2021.104391

Other

Modification None specified

Evidence Text

Transmission Electron Microscopy (TEM)

PMID 28683194

Reference Title SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Notes SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.

Modification

None specified

Notes

SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.

PMID

30642185 28683194

Reference_Title

SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly