TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB87658

Peptide_Name

peroxisometargeting tripeptide

Activity

Selfassembly

Activity_category_statistics

Self-assembling and biomaterial peptides

Database_Source

SAPdb

Sequence_Type

standard

Has_Modification No

Description A 3-aa standard natural selfassembly peptide sequence curated from SAPdb, with an available 3D structural model.

Sequence

SKL

FASTA

>TPDB87658|Selfassembly|length=3
SKL

Formula C15H30N4O5

Absent Amino Acids ARNDCEQGHIMFPTWYV

Common Amino Acids LKS

Mass 346.43

PI 10.10

Basic Residues 1

Acidic Residues 0

Hydrophobic Residues 1

Net Charge +1

Boman Index 0.56

Hydrophobicity -0.300

Aliphatic Index 130.00

Half Life

Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 0

Absorbance 280nm 0.00

Polar Residues 1

number

0

A

0

R

0

N

0

D

0

C

0

E

0

Q

0

G

0

H

0

I

1

L

1

K

0

M

0

F

0

P

1

S

0

T

0

W

0

Y

0

V

Amino Acid Distribution

A: 0 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 1 K: 1 M: 0 F: 0 P: 0 S: 1 T: 0 W: 0 Y: 0 V: 0

Length

3

Formula

C15H30N4O5

Mass

346.43

PI

10.10

Net Charge

+1

Boman Index

0.56

Hydrophobicity

-0.300

Record 1 Selfassembly

Source

PMID 29956888

DOI 10.1016/j.compbiomed.2021.104391

Title

SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Activity Endpoint Nanostructure formation

Nanostructure Nanostructure nanostructures

Assembly Trigger concentration: 0.698mmol/g

Source Annotation Selfassembly; Nanostructure=Nanostructure; nanostructures; Trigger=concentration: 0.698mmol/g

Source Activity Label Selfassembly

Evidence 1 Selfassembly

Activity

Activity Endpoint Nanostructure formation

Activity Raw

Selfassembly Nanostructure=Nanostructure nanostructures Trigger=concentration: 0.698mmol/g

Detail Activity Nanostructure nanostructures

Source & Reference

Database Source SAPdb

DOI 10.1016/j.compbiomed.2021.104391

Other

Modification None specified

Assembly Trigger concentration: 0.698mmol/g

PMID 29956888

Reference Title SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Notes SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.

Assembly_Trigger

concentration: 0.698mmol/g

Modification

None specified

Notes

SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.

PMID

29956888

Reference_Title

SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly