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Peptide record

TPDB87626

Bis(cyclobutane)-β-dipeptides 1 Selfassembly standard
2 amino acids
Basic Information
TPDB87626
Bis(cyclobutane)-β-dipeptides 1
Selfassembly
Self-assembling and biomaterial peptides
SAPdb
standard
No
A 2-aa standard natural selfassembly peptide sequence curated from SAPdb, without an available 3D structural model.
Sequence
Bis(cyclobutane)-β-dipeptides 1
Physicochemical Analysis
C93H145N21O37S2
RQGHKMFWV
EI
2213.41
2.79
0
5
6
-5
7.30
-0.126
47.43
Mammalian: Yeast: E.coli:
1615
72.96
8
Residue Composition
number
1
A
0
R
1
N
2
D
2
C
3
E
0
Q
0
G
0
H
3
I
1
L
0
K
0
M
0
F
2
P
2
S
2
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 1 R: 0 N: 1 D: 2 C: 2 E: 3 Q: 0 G: 0 H: 0 I: 3 L: 1 K: 0 M: 0 F: 0 P: 2 S: 2 T: 2 W: 0 Y: 1 V: 0
Chemical Descriptors
2
C93H145N21O37S2
2213.41
2.79
-5
7.30
-0.126
Self-Assembly Information 3 records
Record 1 Selfassembly

Source

21404341
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Xerogel Xerogel (consists of fibrils network)
temperature: Room temperature solvent: Toluene concentration: 40mM
Selfassembly; Nanostructure=Xerogel; Xerogel (consists of fibrils network); Trigger=temperature: Room temperature; solvent: Toluene; concentration: 40mM
Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM) and AFM (Atomic force Microscopy)
Selfassembly
Record 2 Selfassembly

Source

21404341
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Xerogel Xerogel (consists of fibrils network which smooth and regualr)
temperature: Room temperature solvent: Ethyl acatate + pentane concentration: 40mM
Selfassembly; Nanostructure=Xerogel; Xerogel (consists of fibrils network which smooth and regualr); Trigger=temperature: Room temperature; solvent: Ethyl acatate + pentane; concentration: 40mM
Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM) and AFM (Atomic force Microscopy)
Selfassembly
Record 3 Selfassembly

Source

21404341
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Fibrillar structure (regular)
temperature: Room temperature solvent: Methanol concentration: 5mM
Selfassembly; Nanostructure=Nanofiber; Fibrillar structure (regular); Trigger=temperature: Room temperature; solvent: Methanol; concentration: 5mM
Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM) and AFM (Atomic force Microscopy)
Selfassembly
Evidence Records 3 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Xerogel Xerogel (consists of fibrils network) Trigger=temperature: Room temperature solvent: Toluene concentration: 40mM
Xerogel Xerogel (consists of fibrils network)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
temperature: Room temperature solvent: Toluene concentration: 40mM
Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM) and AFM (Atomic force Microscopy)
21404341
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Xerogel Xerogel (consists of fibrils network which smooth and regualr) Trigger=temperature: Room temperature solvent: Ethyl acatate + pentane concentration: 40mM
Xerogel Xerogel (consists of fibrils network which smooth and regualr)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
temperature: Room temperature solvent: Ethyl acatate + pentane concentration: 40mM
Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM) and AFM (Atomic force Microscopy)
21404341
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 3 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Fibrillar structure (regular) Trigger=temperature: Room temperature solvent: Methanol concentration: 5mM
Nanofiber Fibrillar structure (regular)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
temperature: Room temperature solvent: Methanol concentration: 5mM
Scanning Electron Microscopy (SEM), Transmission Electron Microscopy (TEM) and AFM (Atomic force Microscopy)
21404341
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Additional Detail Fields 5 fields
temperature: Room temperature solvent: Toluene concentration: 40mM solvent: Ethyl acatate + pentane solvent: Methanol concentration: 5mM
None specified
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
21404341
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly