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Peptide record

TPDB87616

Dipeptide 13 Dipeptide 14 Selfassembly modified_plain modified
2 amino acids
Basic Information
TPDB87616
Dipeptide 13 Dipeptide 14
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 2-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
Cyano-Napthalene or napthalene derivative-AG
Physicochemical Analysis
C169H266N52O61S1
QKMFSW
A
4034.34
4.32
4
7
14
-5
16.35
-0.552
64.55
Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour
1490
36.93
10
Residue Composition
number
7
A
2
R
5
N
1
D
1
C
6
E
0
Q
1
G
2
H
2
I
2
L
0
K
0
M
0
F
2
P
0
S
3
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 7 R: 2 N: 5 D: 1 C: 1 E: 6 Q: 0 G: 1 H: 2 I: 2 L: 2 K: 0 M: 0 F: 0 P: 2 S: 0 T: 3 W: 0 Y: 1 V: 2
Chemical Descriptors
2
C169H266N52O61S1
4034.34
4.32
-5
16.35
-0.552
Self-Assembly Information 2 records
Record 1 Selfassembly

Source

20695592
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Turbid gel
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
Selfassembly; Nanostructure=Hydrogel; Turbid gel; Trigger=pH: 3.4 +/- 0.2.; temperature: Room temperature; solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone); concentration: 0.5%wt
Transmission Electron Microscopy (TEM)
Selfassembly
Record 2 Selfassembly

Source

20695592
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Turbid Gel
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
Selfassembly; Nanostructure=Turbid Gel; Trigger=pH: 3.4 +/- 0.2.; temperature: Room temperature; solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL); concentration: 0.5 wt%
Transmission Electron Microscopy (TEM)
Selfassembly
Evidence Records 2 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Turbid gel Trigger=pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
Hydrogel Turbid gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Cyano-Napthalene or napthalene derivative
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
Transmission Electron Microscopy (TEM)
20695592
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Turbid Gel Trigger=pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
Turbid Gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Cyano-Napthalene or napthalene derivative
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
Transmission Electron Microscopy (TEM)
20695592
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID 1248 nanostr_class=Other but nanostr gives explicit morphology low-detail seed row.
Additional Detail Fields 5 fields
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
N-terminal: Cyano-Napthalene or napthalene derivative
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database. SAPdb ID 1248 nanostr_class=Other but nanostr gives explicit morphology low-detail seed row.
20695592
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly