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Peptide record

TPDB87589

G1 or p-Phenyl-L-Asp-L-Phe Selfassembly modified_plain modified
2 amino acids
Basic Information
TPDB87589
G1 or p-Phenyl-L-Asp-L-Phe
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 2-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
para-Phenylation-DF
Physicochemical Analysis
C82H121N23O25
CQGKMSWV
A
1829.00
5.22
2
2
7
-1
3.45
-0.547
56.84
Mammalian: >20 hour Yeast: >20 hour E.coli: ?
1490
81.47
4
Residue Composition
number
3
A
1
R
2
N
1
D
0
C
1
E
0
Q
0
G
1
H
1
I
1
L
0
K
0
M
1
F
2
P
0
S
1
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 3 R: 1 N: 2 D: 1 C: 0 E: 1 Q: 0 G: 0 H: 1 I: 1 L: 1 K: 0 M: 0 F: 1 P: 2 S: 0 T: 1 W: 0 Y: 1 V: 0
Chemical Descriptors
2
C82H121N23O25
1829.00
5.22
-1
3.45
-0.547
Self-Assembly Information 8 records
Record 1 Selfassembly

Source

24453207
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Organogel
temperature: 20 °C solvent: Ethanol concentration: 1 mg/ml
Selfassembly; Nanostructure=Organogel; Trigger=temperature: 20 °C; solvent: Ethanol; concentration: 1 mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
Selfassembly
Record 2 Selfassembly

Source

24453207
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Organogel Organogel (consists of thin and long helical Nanofibers)
temperature: 20 °C solvent: Ethanol + ultrasonic treatment for 4 minutes concentration: 1 mg/ml
Selfassembly; Nanostructure=Organogel; Organogel (consists of thin and long helical Nanofibers); Trigger=temperature: 20 °C; solvent: Ethanol + ultrasonic treatment for 4 minutes; concentration: 1 mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
Selfassembly
Record 3 Selfassembly

Source

24453207
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Organogel Organogel (consists of wider and thicker helical Nanofibers)
temperature: 20 °C solvent: Ethanol + quinidine(+) +ultrasonic treatment for 4 minutes concentration: 1 mg/ml
Selfassembly; Nanostructure=Organogel; Organogel (consists of wider and thicker helical Nanofibers); Trigger=temperature: 20 °C; solvent: Ethanol + quinidine(+) +ultrasonic treatment for 4 minutes; concentration: 1 mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
Selfassembly
Record 4 Selfassembly

Source

24453207
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Single long fibers
temperature: 20 °C solvent: Chloroform concentration: 0.1mg/ml
Selfassembly; Nanostructure=Nanofiber; Single long fibers; Trigger=temperature: 20 °C; solvent: Chloroform; concentration: 0.1mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
Selfassembly
Record 5 Selfassembly

Source

24453207
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Denditic pattern of fibers
temperature: 20 °C solvent: Chloroform concentration: 0.5mg/ml
Selfassembly; Nanostructure=Nanofiber; Denditic pattern of fibers; Trigger=temperature: 20 °C; solvent: Chloroform; concentration: 0.5mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
Selfassembly
Record 6 Selfassembly

Source

24453207
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Nest like pattern of fibers
temperature: 20 °C solvent: Chloroform concentration: 1mg/ml
Selfassembly; Nanostructure=Nanofiber; Nest like pattern of fibers; Trigger=temperature: 20 °C; solvent: Chloroform; concentration: 1mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
Selfassembly
Record 7 Selfassembly

Source

24453207
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Many short fibers
temperature: 20 °C solvent: Chloroform + quinidine(+) +ultrasonic treatment for 4 minutes concentration: 1mg/ml
Selfassembly; Nanostructure=Nanofiber; Many short fibers; Trigger=temperature: 20 °C; solvent: Chloroform + quinidine(+) +ultrasonic treatment for 4 minutes; concentration: 1mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
Selfassembly
Record 8 Selfassembly

Source

24453207
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Rootlike pattern of Nanofibers
temperature: 20 °C solvent: Chloroform + quinidine(-) +ultrasonic treatment for 4 minutes concentration: 1mg/ml
Selfassembly; Nanostructure=Nanofiber; Rootlike pattern of Nanofibers; Trigger=temperature: 20 °C; solvent: Chloroform + quinidine(-) +ultrasonic treatment for 4 minutes; concentration: 1mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
Selfassembly
Evidence Records 8 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Organogel Trigger=temperature: 20 °C solvent: Ethanol concentration: 1 mg/ml
Organogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: para-Phenylation
temperature: 20 °C solvent: Ethanol concentration: 1 mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
24453207
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Organogel Organogel (consists of thin and long helical Nanofibers) Trigger=temperature: 20 °C solvent: Ethanol + ultrasonic treatment for 4 minutes concentration: 1 mg/ml
Organogel Organogel (consists of thin and long helical Nanofibers)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: para-Phenylation
temperature: 20 °C solvent: Ethanol + ultrasonic treatment for 4 minutes concentration: 1 mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
24453207
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 3 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Organogel Organogel (consists of wider and thicker helical Nanofibers) Trigger=temperature: 20 °C solvent: Ethanol + quinidine(+) +ultrasonic treatment for 4 minutes concentration: 1 mg/ml
Organogel Organogel (consists of wider and thicker helical Nanofibers)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: para-Phenylation
temperature: 20 °C solvent: Ethanol + quinidine(+) +ultrasonic treatment for 4 minutes concentration: 1 mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
24453207
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 4 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Single long fibers Trigger=temperature: 20 °C solvent: Chloroform concentration: 0.1mg/ml
Nanofiber Single long fibers

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: para-Phenylation
temperature: 20 °C solvent: Chloroform concentration: 0.1mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
24453207
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 5 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Denditic pattern of fibers Trigger=temperature: 20 °C solvent: Chloroform concentration: 0.5mg/ml
Nanofiber Denditic pattern of fibers

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: para-Phenylation
temperature: 20 °C solvent: Chloroform concentration: 0.5mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
24453207
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 6 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Nest like pattern of fibers Trigger=temperature: 20 °C solvent: Chloroform concentration: 1mg/ml
Nanofiber Nest like pattern of fibers

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: para-Phenylation
temperature: 20 °C solvent: Chloroform concentration: 1mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
24453207
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 7 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Many short fibers Trigger=temperature: 20 °C solvent: Chloroform + quinidine(+) +ultrasonic treatment for 4 minutes concentration: 1mg/ml
Nanofiber Many short fibers

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: para-Phenylation
temperature: 20 °C solvent: Chloroform + quinidine(+) +ultrasonic treatment for 4 minutes concentration: 1mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
24453207
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 8 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Rootlike pattern of Nanofibers Trigger=temperature: 20 °C solvent: Chloroform + quinidine(-) +ultrasonic treatment for 4 minutes concentration: 1mg/ml
Nanofiber Rootlike pattern of Nanofibers

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: para-Phenylation
temperature: 20 °C solvent: Chloroform + quinidine(-) +ultrasonic treatment for 4 minutes concentration: 1mg/ml
Scanning Electron Microscopy (SEM), AFM (Atomic Force Microscopy)
24453207
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Additional Detail Fields 5 fields
temperature: 20 °C solvent: Ethanol concentration: 1 mg/ml solvent: Ethanol + ultrasonic treatment for 4 minutes solvent: Ethanol + quinidine(+) +ultrasonic treatment for 4 minutes solvent: Chloroform concentration: 0.1mg/ml concentration: 0.5mg/ml concentration: 1mg/ml solvent: Chloroform + quinidine(+) +ultrasonic treatment for 4 minutes solvent: Chloroform + quinidine(-) +ultrasonic treatment for 4 minutes
N-terminal: para-Phenylation
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
24453207
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly