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Peptide record

TPDB87585

D-Ala-D-Ala Selfassembly standard
0 amino acids
Basic Information
3D PDB MODEL
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TPDB87585
D-Ala-D-Ala
Selfassembly
Self-assembling and biomaterial peptides
SAPdb
standard
No
A 0-aa standard natural selfassembly peptide sequence curated from SAPdb, with an available 3D structural model.
Sequence
aa
Physicochemical Analysis
C6H12N2O3
RNDCEQGHILKMFPSTWYV
A
160.17
6.02
0
0
2
-0
-0.34
1.800
100.00
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
0
Residue Composition
number
2
A
0
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
0
L
0
K
0
M
0
F
0
P
0
S
0
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 0 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 0
Chemical Descriptors
0
C6H12N2O3
160.17
6.02
-0
-0.34
1.800
Self-Assembly Information 5 records
Record 1 Selfassembly

Source

23915244
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanoribbon Right handed twisted Nanoribbon
temperature: Room temperature solvent: Water concentration: 20mg/ml
Selfassembly; Nanostructure=Nanoribbon; Right handed twisted Nanoribbon; Trigger=temperature: Room temperature; solvent: Water; concentration: 20mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
Selfassembly
Record 2 Selfassembly

Source

23915244
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanoribbon Left handed Nanoribbon
temperature: Room temperature solvent: Tetrahydrofuran (THF) concentration: 30mg/ml
Selfassembly; Nanostructure=Nanoribbon; Left handed Nanoribbon; Trigger=temperature: Room temperature; solvent: Tetrahydrofuran (THF); concentration: 30mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
Selfassembly
Record 3 Selfassembly

Source

23915244
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanoribbon Right handed Nanoribbon
temperature: Room temperature solvent: Water +Tetrahydrofuran (THF) [9:1 and 7:3] concentration: 30mg/ml
Selfassembly; Nanostructure=Nanoribbon; Right handed Nanoribbon; Trigger=temperature: Room temperature; solvent: Water +Tetrahydrofuran (THF) [9:1 and 7:3]; concentration: 30mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
Selfassembly
Record 4 Selfassembly

Source

23915244
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Shrank particles
temperature: Room temperature solvent: Water +Tetrahydrofuran (THF) [5:5 and 3:7] concentration: 30mg/ml
Selfassembly; Nanostructure=Shrank particles; Trigger=temperature: Room temperature; solvent: Water +Tetrahydrofuran (THF) [5:5 and 3:7]; concentration: 30mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
Selfassembly
Record 5 Selfassembly

Source

23915244
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Straight belt
temperature: Room temperature solvent: Water +Tetrahydrofuran (THF) [1:9] concentration: 30mg/ml
Selfassembly; Nanostructure=Straight belt; Trigger=temperature: Room temperature; solvent: Water +Tetrahydrofuran (THF) [1:9]; concentration: 30mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
Selfassembly
Evidence Records 5 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanoribbon Right handed twisted Nanoribbon Trigger=temperature: Room temperature solvent: Water concentration: 20mg/ml
Nanoribbon Right handed twisted Nanoribbon

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
temperature: Room temperature solvent: Water concentration: 20mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
23915244
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanoribbon Left handed Nanoribbon Trigger=temperature: Room temperature solvent: Tetrahydrofuran (THF) concentration: 30mg/ml
Nanoribbon Left handed Nanoribbon

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
temperature: Room temperature solvent: Tetrahydrofuran (THF) concentration: 30mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
23915244
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 3 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanoribbon Right handed Nanoribbon Trigger=temperature: Room temperature solvent: Water +Tetrahydrofuran (THF) [9:1 and 7:3] concentration: 30mg/ml
Nanoribbon Right handed Nanoribbon

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
temperature: Room temperature solvent: Water +Tetrahydrofuran (THF) [9:1 and 7:3] concentration: 30mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
23915244
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 4 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Shrank particles Trigger=temperature: Room temperature solvent: Water +Tetrahydrofuran (THF) [5:5 and 3:7] concentration: 30mg/ml
Shrank particles

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
temperature: Room temperature solvent: Water +Tetrahydrofuran (THF) [5:5 and 3:7] concentration: 30mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
23915244
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID 1353 nanostr_class=Other but nanostr gives explicit morphology low-detail seed row.
Evidence 5 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Straight belt Trigger=temperature: Room temperature solvent: Water +Tetrahydrofuran (THF) [1:9] concentration: 30mg/ml
Straight belt

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
temperature: Room temperature solvent: Water +Tetrahydrofuran (THF) [1:9] concentration: 30mg/ml
FE - SEM (Field Emission Scanning Electron Microscopy or FE - SEM)
23915244
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID 1354 nanostr_class=Other but nanostr gives explicit morphology low-detail seed row.
Additional Detail Fields 5 fields
temperature: Room temperature solvent: Water concentration: 20mg/ml solvent: Tetrahydrofuran (THF) concentration: 30mg/ml solvent: Water +Tetrahydrofuran (THF) [9:1 and 7:3] solvent: Water +Tetrahydrofuran (THF) [5:5 and 3:7] solvent: Water +Tetrahydrofuran (THF) [1:9]
None specified
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database. SAPdb ID 1353 nanostr_class=Other but nanostr gives explicit morphology low-detail seed row. SAPdb ID 1354
23915244
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly