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Peptide record

TPDB87544

Dipeptide 4 Dipeptide 5 Dipeptide16 Dipeptide7 Selfassembly modified_plain modified
2 amino acids
Basic Information
TPDB87544
Dipeptide 4 Dipeptide 5 Dipeptide16 Dipeptide7
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 2-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
Napthalene-FG
Physicochemical Analysis
C56H82N16O20
RDCQIKMSWYV
ANE
1299.36
4.25
1
2
4
-2
4.41
-0.746
45.38
Mammalian: 1.4 hour Yeast: 3 min E.coli: >10 hour
0
0.00
3
Residue Composition
number
2
A
0
R
2
N
0
D
0
C
2
E
0
Q
1
G
1
H
0
I
1
L
0
K
0
M
1
F
1
P
0
S
1
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 0 N: 2 D: 0 C: 0 E: 2 Q: 0 G: 1 H: 1 I: 0 L: 1 K: 0 M: 0 F: 1 P: 1 S: 0 T: 1 W: 0 Y: 0 V: 0
Chemical Descriptors
2
C56H82N16O20
1299.36
4.25
-2
4.41
-0.746
Self-Assembly Information 4 records
Record 1 Selfassembly

Source

20695592
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Turbid Gel
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
Selfassembly; Nanostructure=Hydrogel; Turbid Gel; Trigger=pH: 3.4 +/- 0.2.; temperature: Room temperature; solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL); concentration: 0.5 wt%
Transmission Electron Microscopy (TEM)
Selfassembly
Record 2 Selfassembly

Source

22651803
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Turbid gel
temperature: Room temperature solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt
Selfassembly; Nanostructure=Hydrogel; Turbid gel; Trigger=temperature: Room temperature; solvent: Water + 0.1 M NaOH; concentration: 5mg/ml or 0.5%wt
Scanning Electron Microscopy (SEM) and X - Ray Diffraction
Selfassembly
Record 3 Selfassembly

Source

22651803
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Transparent or clear gel
temperature: Room temperature solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt
Selfassembly; Nanostructure=Hydrogel; Transparent or clear gel; Trigger=temperature: Room temperature; solvent: Water + 0.1 M NaOH; concentration: 5mg/ml or 0.5%wt
Scanning Electron Microscopy (SEM) and X - Ray Diffraction
Selfassembly
Record 4 Selfassembly

Source

20695592
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Transparent gel
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
Selfassembly; Nanostructure=Hydrogel; Transparent gel; Trigger=pH: 3.4 +/- 0.2.; temperature: Room temperature; solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone); concentration: 0.5%wt
Transmission Electron Microscopy (TEM)
Selfassembly
Evidence Records 4 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Turbid Gel Trigger=pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
Hydrogel Turbid Gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
Transmission Electron Microscopy (TEM)
20695592
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Turbid gel Trigger=temperature: Room temperature solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt
Hydrogel Turbid gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
temperature: Room temperature solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt
Scanning Electron Microscopy (SEM) and X - Ray Diffraction
22651803
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 3 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Transparent or clear gel Trigger=temperature: Room temperature solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt
Hydrogel Transparent or clear gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
temperature: Room temperature solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt
Scanning Electron Microscopy (SEM) and X - Ray Diffraction
22651803
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 4 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Transparent gel Trigger=pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
Hydrogel Transparent gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
Transmission Electron Microscopy (TEM)
20695592
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Additional Detail Fields 5 fields
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt% solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
N-terminal: Napthalene
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
20695592 22651803
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly