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Peptide record

TPDB87541

Dipeptide 6 Dipeptide 7 Dipeptide9 Hydrogelator 1 (Nap-L-Phe-L-Phe) NapFF Peptide 1 Peptide-I Selfassembly modified_plain modified
2 amino acids
Basic Information
TPDB87541
Dipeptide 6 Dipeptide 7 Dipeptide9 Hydrogelator 1 (Nap-L-Phe-L-Phe) NapFF Peptide 1 Peptide-I
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 2-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
Napthalene-FF
Physicochemical Analysis
C63H88N16O20
RDCQGIKMSWYV
ANEF
1389.49
4.25
1
2
5
-2
3.27
-0.500
45.38
Mammalian: 1.4 hour Yeast: 3 min E.coli: >10 hour
0
0.00
3
Residue Composition
number
2
A
0
R
2
N
0
D
0
C
2
E
0
Q
0
G
1
H
0
I
1
L
0
K
0
M
2
F
1
P
0
S
1
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 0 N: 2 D: 0 C: 0 E: 2 Q: 0 G: 0 H: 1 I: 0 L: 1 K: 0 M: 0 F: 2 P: 1 S: 0 T: 1 W: 0 Y: 0 V: 0
Chemical Descriptors
2
C63H88N16O20
1389.49
4.25
-2
3.27
-0.500
Self-Assembly Information 7 records
Record 1 Selfassembly

Source

25068387
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel
pH: 6 -7 solvent: Deionized water + 1M Sodium hydroxide + 0.5M HCl concentration: > 0.5 w%
Selfassembly; Nanostructure=Hydrogel; Trigger=pH: 6 -7; solvent: Deionized water + 1M Sodium hydroxide + 0.5M HCl; concentration: > 0.5 w%
Transmission Electron Microscopy (TEM), Cryo - Scanning Electron Microscopy (SEM)
Selfassembly
Record 2 Selfassembly

Source

20695592
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Transparent Gel
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
Selfassembly; Nanostructure=Hydrogel; Transparent Gel; Trigger=pH: 3.4 +/- 0.2.; temperature: Room temperature; solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL); concentration: 0.5 wt%
Transmission Electron Microscopy (TEM)
Selfassembly
Record 3 Selfassembly

Source

22651803
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Transparent or clear gel
temperature: Room temperature solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt
Selfassembly; Nanostructure=Hydrogel; Transparent or clear gel; Trigger=temperature: Room temperature; solvent: Water + 0.1 M NaOH; concentration: 5mg/ml or 0.5%wt
Scanning Electron Microscopy (SEM) and X - Ray Diffraction
Selfassembly
Record 4 Selfassembly

Source

20050040
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Hydrogel (consists of fibers)
pH: 7.5 temperature: Room temperature solvent: Water concentration: 10mg/ml
Selfassembly; Nanostructure=Hydrogel; Hydrogel (consists of fibers); Trigger=pH: 7.5; temperature: Room temperature; solvent: Water; concentration: 10mg/ml
Transmission Electron Microscopy (TEM)
Selfassembly
Record 5 Selfassembly

Source

20461244
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Transparent hydrogel
solvent: Water + NaOH + 3.75 mg/ml GdL(glucono-delta-lactone) concentration: 2.2mM
Selfassembly; Nanostructure=Hydrogel; Transparent hydrogel; Trigger=solvent: Water + NaOH + 3.75 mg/ml GdL(glucono-delta-lactone); concentration: 2.2mM
Selfassembly
Record 6 Selfassembly

Source

20695592
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Transparent gel
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
Selfassembly; Nanostructure=Hydrogel; Transparent gel; Trigger=pH: 3.4 +/- 0.2.; temperature: Room temperature; solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone); concentration: 0.5%wt
Transmission Electron Microscopy (TEM)
Selfassembly
Record 7 Selfassembly

Source

22005767
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel
pH: 11.7 solvent: Water + GdL(glucono-delta-lactone) + Calcium nitrate concentration: 0.5 % wt
Selfassembly; Nanostructure=Hydrogel; Trigger=pH: 11.7; solvent: Water + GdL(glucono-delta-lactone) + Calcium nitrate; concentration: 0.5 % wt
Cryo - Transmission Electron Microscopy (TEM)
Selfassembly
Evidence Records 7 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Trigger=pH: 6 -7 solvent: Deionized water + 1M Sodium hydroxide + 0.5M HCl concentration: > 0.5 w%
Hydrogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
pH: 6 -7 solvent: Deionized water + 1M Sodium hydroxide + 0.5M HCl concentration: > 0.5 w%
Transmission Electron Microscopy (TEM), Cryo - Scanning Electron Microscopy (SEM)
25068387
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Transparent Gel Trigger=pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
Hydrogel Transparent Gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt%
Transmission Electron Microscopy (TEM)
20695592
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 3 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Transparent or clear gel Trigger=temperature: Room temperature solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt
Hydrogel Transparent or clear gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
temperature: Room temperature solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt
Scanning Electron Microscopy (SEM) and X - Ray Diffraction
22651803
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 4 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Hydrogel (consists of fibers) Trigger=pH: 7.5 temperature: Room temperature solvent: Water concentration: 10mg/ml
Hydrogel Hydrogel (consists of fibers)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
pH: 7.5 temperature: Room temperature solvent: Water concentration: 10mg/ml
Transmission Electron Microscopy (TEM)
20050040
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 5 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Transparent hydrogel Trigger=solvent: Water + NaOH + 3.75 mg/ml GdL(glucono-delta-lactone) concentration: 2.2mM
Hydrogel Transparent hydrogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
solvent: Water + NaOH + 3.75 mg/ml GdL(glucono-delta-lactone) concentration: 2.2mM
20461244
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 6 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Transparent gel Trigger=pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
Hydrogel Transparent gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt
Transmission Electron Microscopy (TEM)
20695592
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 7 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Trigger=pH: 11.7 solvent: Water + GdL(glucono-delta-lactone) + Calcium nitrate concentration: 0.5 % wt
Hydrogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Napthalene
pH: 11.7 solvent: Water + GdL(glucono-delta-lactone) + Calcium nitrate concentration: 0.5 % wt
Cryo - Transmission Electron Microscopy (TEM)
22005767
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Additional Detail Fields 5 fields
pH: 6 -7 solvent: Deionized water + 1M Sodium hydroxide + 0.5M HCl concentration: > 0.5 w% pH: 3.4 +/- 0.2. temperature: Room temperature solvent: Deionized water + 0.1 M Sodium hydroxide + glucono-Å’Â¥-lactone (GdL) concentration: 0.5 wt% solvent: Water + 0.1 M NaOH concentration: 5mg/ml or 0.5%wt pH: 7.5 solvent: Water concentration: 10mg/ml solvent: Water + NaOH + 3.75 mg/ml GdL(glucono-delta-lactone) concentration: 2.2mM solvent: Water + NaOH + 8.75 mg/ml GdL(glucono-delta-lactone) concentration: 0.5%wt pH: 11.7 solvent: Water + GdL(glucono-delta-lactone) + Calcium nitrate concentration: 0.5 % wt
N-terminal: Napthalene
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
25068387 20695592 22651803 20050040 20461244 22005767
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly