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Peptide record

TPDB87539

Compound 1 Selfassembly modified_plain modified
2 amino acids
Basic Information
TPDB87539
Compound 1
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 2-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
Indole acetic acid-FF
Physicochemical Analysis
C83H126N18O28S3
RQGHKMPSWYV
CI
1920.20
2.83
0
4
8
-4
2.25
0.752
83.81
Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour
125
6.51
5
Residue Composition
number
2
A
0
R
1
N
2
D
3
C
2
E
0
Q
0
G
0
H
3
I
1
L
0
K
0
M
2
F
0
P
0
S
1
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 0 N: 1 D: 2 C: 3 E: 2 Q: 0 G: 0 H: 0 I: 3 L: 1 K: 0 M: 0 F: 2 P: 0 S: 0 T: 1 W: 0 Y: 0 V: 0
Chemical Descriptors
2
C83H126N18O28S3
1920.20
2.83
-4
2.25
0.752
Self-Assembly Information 2 records
Record 1 Selfassembly

Source

25354784
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Hydrogel (Containing Nanofibres)
temperature: Heated at 90 °C and followed by cooling solvent: 1mM Phosphate buffer saline concentration: 1% w/v
Selfassembly; Nanostructure=Hydrogel; Hydrogel (Containing Nanofibres); Trigger=temperature: Heated at 90 °C and followed by cooling; solvent: 1mM Phosphate buffer saline; concentration: 1% w/v
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
Selfassembly
Record 2 Selfassembly

Source

25354784
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Transparent Gel
solvent: DMSO + water concentration: > 0.4% w/v
Selfassembly; Nanostructure=Hydrogel; Transparent Gel; Trigger=solvent: DMSO + water; concentration: > 0.4% w/v
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
Selfassembly
Evidence Records 2 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Hydrogel (Containing Nanofibres) Trigger=temperature: Heated at 90 °C and followed by cooling solvent: 1mM Phosphate buffer saline concentration: 1% w/v
Hydrogel Hydrogel (Containing Nanofibres)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Indole acetic acid
temperature: Heated at 90 °C and followed by cooling solvent: 1mM Phosphate buffer saline concentration: 1% w/v
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
25354784
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Transparent Gel Trigger=solvent: DMSO + water concentration: > 0.4% w/v
Hydrogel Transparent Gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Indole acetic acid
solvent: DMSO + water concentration: > 0.4% w/v
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
25354784
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Additional Detail Fields 5 fields
temperature: Heated at 90 °C and followed by cooling solvent: 1mM Phosphate buffer saline concentration: 1% w/v solvent: DMSO + water concentration: > 0.4% w/v
N-terminal: Indole acetic acid
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
25354784
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly