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Peptide record

TPDB87537

B or AcK(NDI)K-NH2 Compound A Selfassembly modified_plain modified
2 amino acids
Basic Information
TPDB87537
B or AcK(NDI)K-NH2 Compound A
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 2-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
Acetylation-KK-Amidation
Physicochemical Analysis
C94H158N24O31S2
RQGHFPSWV
A
2184.55
6.35
2
2
10
-0
2.91
0.154
81.67
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
1490
68.21
7
Residue Composition
number
4
A
0
R
2
N
1
D
1
C
1
E
0
Q
0
G
0
H
3
I
1
L
2
K
1
M
0
F
0
P
0
S
3
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 4 R: 0 N: 2 D: 1 C: 1 E: 1 Q: 0 G: 0 H: 0 I: 3 L: 1 K: 2 M: 1 F: 0 P: 0 S: 0 T: 3 W: 0 Y: 1 V: 0
Chemical Descriptors
2
C94H158N24O31S2
2184.55
6.35
-0
2.91
0.154
Self-Assembly Information 3 records
Record 1 Selfassembly

Source

25384556
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanoribbon, Nanotape Coiled ribbon and tapes
pH: 7.4 temperature: 37 °C solvent: Phosphate buffer saline concentration: 1mM
Selfassembly; Nanostructure=Nanoribbon, Nanotape; Coiled ribbon and tapes; Trigger=pH: 7.4; temperature: 37 °C; solvent: Phosphate buffer saline; concentration: 1mM
Transmission Electron Microscopy (TEM)
Selfassembly
Record 2 Selfassembly

Source

25384556
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanotube Nanotubes
pH: 7.4 temperature: 37 °C solvent: Phosphate buffer saline concentration: Preincubation at 10mM for 24 h, 1mM for rest 48 hours
Selfassembly; Nanostructure=Nanotube; Nanotubes; Trigger=pH: 7.4; temperature: 37 °C; solvent: Phosphate buffer saline; concentration: Preincubation at 10mM for 24 h, 1mM for rest 48 hours
Transmission Electron Microscopy (TEM)
Selfassembly
Record 3 Selfassembly

Source

19852501
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanoribbon Flattened, twisted Nanoribbons
temperature: Room temperature solvent: Water concentration: 250 μM
Selfassembly; Nanostructure=Nanoribbon; Flattened, twisted Nanoribbons; Trigger=temperature: Room temperature; solvent: Water; concentration: 250 μM
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
Selfassembly
Evidence Records 3 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanoribbon, Nanotape Coiled ribbon and tapes Trigger=pH: 7.4 temperature: 37 °C solvent: Phosphate buffer saline concentration: 1mM
Nanoribbon, Nanotape Coiled ribbon and tapes

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Acetylation C-terminal: Amidation
pH: 7.4 temperature: 37 °C solvent: Phosphate buffer saline concentration: 1mM
Transmission Electron Microscopy (TEM)
25384556
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanotube Nanotubes Trigger=pH: 7.4 temperature: 37 °C solvent: Phosphate buffer saline concentration: Preincubation at 10mM for 24 h, 1mM for rest 48 hours
Nanotube Nanotubes

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Acetylation C-terminal: Amidation
pH: 7.4 temperature: 37 °C solvent: Phosphate buffer saline concentration: Preincubation at 10mM for 24 h, 1mM for rest 48 hours
Transmission Electron Microscopy (TEM)
25384556
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 3 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanoribbon Flattened, twisted Nanoribbons Trigger=temperature: Room temperature solvent: Water concentration: 250 μM
Nanoribbon Flattened, twisted Nanoribbons

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Acetylation C-terminal: Amidation
temperature: Room temperature solvent: Water concentration: 250 μM
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
19852501
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Additional Detail Fields 5 fields
pH: 7.4 temperature: 37 °C solvent: Phosphate buffer saline concentration: 1mM concentration: Preincubation at 10mM for 24 h, 1mM for rest 48 hours temperature: Room temperature solvent: Water concentration: 250 ŒºM
N-terminal: Acetylation C-terminal: Amidation
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
25384556 19852501
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly