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Peptide record

TPDB87528

Pro-Lys dipeptide 1 Selfassembly modified_plain modified
2 amino acids
Basic Information
TPDB87528
Pro-Lys dipeptide 1
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 2-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
PK-1,4,5,8-naphthalenetetracarboxylic acid diimide (NDI)
Physicochemical Analysis
C186H299N53O63S4
QGFSWV
I
4413.98
4.28
5
8
15
-5
14.39
-0.204
64.64
Mammalian: >20 hour Yeast: >20 hour E.coli: ?
1615
36.59
10
Residue Composition
number
5
A
2
R
3
N
4
D
3
C
4
E
0
Q
0
G
2
H
6
I
2
L
1
K
1
M
0
F
2
P
0
S
3
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 5 R: 2 N: 3 D: 4 C: 3 E: 4 Q: 0 G: 0 H: 2 I: 6 L: 2 K: 1 M: 1 F: 0 P: 2 S: 0 T: 3 W: 0 Y: 1 V: 0
Chemical Descriptors
2
C186H299N53O63S4
4413.98
4.28
-5
14.39
-0.204
Self-Assembly Information 2 records
Record 1 Selfassembly

Source

26360936
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanotube, Nanofiber, Nanoribbon Nanotube, Nanofibers and helical twisted Nanoribbon mixture
solvent: Water concentration: 500μM
Selfassembly; Nanostructure=Nanotube, Nanofiber, Nanoribbon; Nanotube, Nanofibers and helical twisted Nanoribbon mixture; Trigger=solvent: Water; concentration: 500μM
Transmission Electron Microscopy (TEM)
Selfassembly
Record 2 Selfassembly

Source

26360936
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanotube
solvent: Water + 4-nitrobenzaldehyde and cyclohexanone concentration: 500μM
Selfassembly; Nanostructure=Nanotube; Trigger=solvent: Water + 4-nitrobenzaldehyde and cyclohexanone; concentration: 500μM
Transmission Electron Microscopy (TEM)
Selfassembly
Evidence Records 2 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanotube, Nanofiber, Nanoribbon Nanotube, Nanofibers and helical twisted Nanoribbon mixture Trigger=solvent: Water concentration: 500μM
Nanotube, Nanofiber, Nanoribbon Nanotube, Nanofibers and helical twisted Nanoribbon mixture

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

C-terminal: 1,4,5,8-naphthalenetetracarboxylic acid diimide (NDI)
solvent: Water concentration: 500μM
Transmission Electron Microscopy (TEM)
26360936
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanotube Trigger=solvent: Water + 4-nitrobenzaldehyde and cyclohexanone concentration: 500μM
Nanotube

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

C-terminal: 1,4,5,8-naphthalenetetracarboxylic acid diimide (NDI)
solvent: Water + 4-nitrobenzaldehyde and cyclohexanone concentration: 500μM
Transmission Electron Microscopy (TEM)
26360936
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Additional Detail Fields 5 fields
solvent: Water concentration: 500μM solvent: Water + 4-nitrobenzaldehyde and cyclohexanone
C-terminal: 1,4,5,8-naphthalenetetracarboxylic acid diimide (NDI)
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
26360936
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly