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Peptide record

TPDB87518

Fmoc-RGD Selfassembly modified_plain modified
3 amino acids
Basic Information
TPDB87518
Fmoc-RGD
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 3-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]-RGD
Physicochemical Analysis
C144H215N43O40S4
QIKPSWV
R
3316.80
8.26
5
3
11
+1
3.01
-0.436
28.22
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
4595
138.54
9
Residue Composition
number
1
A
4
R
3
N
1
D
2
C
2
E
0
Q
1
G
1
H
0
I
3
L
0
K
2
M
2
F
0
P
0
S
1
T
0
W
3
Y
0
V
Amino Acid Distribution
A: 1 R: 4 N: 3 D: 1 C: 2 E: 2 Q: 0 G: 1 H: 1 I: 0 L: 3 K: 0 M: 2 F: 2 P: 0 S: 0 T: 1 W: 0 Y: 3 V: 0
Chemical Descriptors
3
C144H215N43O40S4
3316.80
8.26
+1
3.01
-0.436
Self-Assembly Information 2 records
Record 1 Selfassembly

Source

22852757
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Hydogel
pH: 6.94 temperature: 50 °C (Heating) and 5 °C (Cooling) solvent: Water concentration: 10% wt
Selfassembly; Nanostructure=Hydrogel; Hydogel; Trigger=pH: 6.94; temperature: 50 °C (Heating) and 5 °C (Cooling); solvent: Water; concentration: 10% wt
Cryo - Transmission Electron Microscopy (TEM)
Selfassembly
Record 2 Selfassembly

Source

19705843
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanotube
pH: ~3 temperature: Room temperature solvent: Water + DMSO concentration: 5mg/ml
Selfassembly; Nanostructure=Nanotube; Trigger=pH: ~3; temperature: Room temperature; solvent: Water + DMSO; concentration: 5mg/ml
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
Selfassembly
Evidence Records 2 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Hydogel Trigger=pH: 6.94 temperature: 50 °C (Heating) and 5 °C (Cooling) solvent: Water concentration: 10% wt
Hydrogel Hydogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 6.94 temperature: 50 °C (Heating) and 5 °C (Cooling) solvent: Water concentration: 10% wt
Cryo - Transmission Electron Microscopy (TEM)
22852757
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanotube Trigger=pH: ~3 temperature: Room temperature solvent: Water + DMSO concentration: 5mg/ml
Nanotube

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: ~3 temperature: Room temperature solvent: Water + DMSO concentration: 5mg/ml
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
19705843
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Additional Detail Fields 5 fields
pH: 6.94 temperature: 50 °C (Heating) and 5 °C (Cooling) solvent: Water concentration: 10% wt pH: ~3 temperature: Room temperature solvent: Water + DMSO concentration: 5mg/ml
N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
22852757 19705843
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly