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Peptide record

TPDB87483

D-FFV. D-Phe-Phe-Val (II) Selfassembly standard
2 amino acids
Basic Information
3D PDB MODEL
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TPDB87483
D-FFV. D-Phe-Phe-Val (II)
Selfassembly
Self-assembling and biomaterial peptides
SAPdb
standard
No
A 2-aa standard natural selfassembly peptide sequence curated from SAPdb, with an available 3D structural model.
Sequence
fFV
Physicochemical Analysis
C23H29N3O4
ARNDCEQGHILKMPSTWY
F
411.50
6.02
0
0
3
-0
-2.19
3.267
96.67
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
0
0.00
0
Residue Composition
number
0
A
0
R
0
N
0
D
0
C
0
E
0
Q
0
G
0
H
0
I
0
L
0
K
0
M
2
F
0
P
0
S
0
T
0
W
0
Y
1
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 0 H: 0 I: 0 L: 0 K: 0 M: 0 F: 2 P: 0 S: 0 T: 0 W: 0 Y: 0 V: 1
Chemical Descriptors
2
C23H29N3O4
411.50
6.02
-0
-2.19
3.267
Self-Assembly Information 3 records
Record 1 Selfassembly

Source

22159641
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Thicker filaments and Hydrogel
pH: 7.4 temperature: Room temperature solvent: 0.1M Phosphate buffer
Selfassembly; Nanostructure=Hydrogel; Thicker filaments and Hydrogel; Trigger=pH: 7.4; temperature: Room temperature; solvent: 0.1M Phosphate buffer
Cryo - Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy), CD (Circular Dichroism spectroscopy) and FTIR (Fourier Transform Infrared) Spectroscopy (Fourier Transform Infrared) Spectroscopy
Selfassembly
Record 2 Selfassembly

Source

24700146
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Twisted or elongated fibril structure
pH: 7.4 temperature: Room temperature solvent: Sodium phosphate buffer concentration: 7mg/ml
Selfassembly; Nanostructure=Nanofiber; Twisted or elongated fibril structure; Trigger=pH: 7.4; temperature: Room temperature; solvent: Sodium phosphate buffer; concentration: 7mg/ml
AFM (Atomic Force Microscopy), Cryo - Transmission Electron Microscopy (TEM), FTIR (Fourier Transform Infrared), CD (Circular Dichroism spectroscopy)
Selfassembly
Record 3 Selfassembly

Source

24700146
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel
pH: 7.4 temperature: Room temperature solvent: Sodium phosphate buffer concentration: 7mg/ml
Selfassembly; Nanostructure=Hydrogel; Trigger=pH: 7.4; temperature: Room temperature; solvent: Sodium phosphate buffer; concentration: 7mg/ml
AFM (Atomic Force Microscopy), Cryo - Transmission Electron Microscopy (TEM), FTIR (Fourier Transform Infrared), CD (Circular Dichroism spectroscopy)
Selfassembly
Evidence Records 3 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Thicker filaments and Hydrogel Trigger=pH: 7.4 temperature: Room temperature solvent: 0.1M Phosphate buffer
Hydrogel Thicker filaments and Hydrogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
pH: 7.4 temperature: Room temperature solvent: 0.1M Phosphate buffer
Cryo - Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy), CD (Circular Dichroism spectroscopy) and FTIR (Fourier Transform Infrared) Spectroscopy (Fourier Transform Infrared) Spectroscopy
22159641
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Twisted or elongated fibril structure Trigger=pH: 7.4 temperature: Room temperature solvent: Sodium phosphate buffer concentration: 7mg/ml
Nanofiber Twisted or elongated fibril structure

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
pH: 7.4 temperature: Room temperature solvent: Sodium phosphate buffer concentration: 7mg/ml
AFM (Atomic Force Microscopy), Cryo - Transmission Electron Microscopy (TEM), FTIR (Fourier Transform Infrared), CD (Circular Dichroism spectroscopy)
24700146
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 3 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Trigger=pH: 7.4 temperature: Room temperature solvent: Sodium phosphate buffer concentration: 7mg/ml
Hydrogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

None specified
pH: 7.4 temperature: Room temperature solvent: Sodium phosphate buffer concentration: 7mg/ml
AFM (Atomic Force Microscopy), Cryo - Transmission Electron Microscopy (TEM), FTIR (Fourier Transform Infrared), CD (Circular Dichroism spectroscopy)
24700146
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Additional Detail Fields 5 fields
pH: 7.4 temperature: Room temperature solvent: 0.1M Phosphate buffer solvent: Sodium phosphate buffer concentration: 7mg/ml
None specified
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
22159641 24700146
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly