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Peptide record

TPDB87452

crystalline dipeptide nanobelts Dipeptide 1 DiPhenylalanine Fluor- enylmethyloxycarbonyl (Fmoc) protected diPhenylalanine (Fmoc-Phe- Phe-OH) Fluorenylmethoxycarbonyl-diPhenylalanine Fmoc-diPhenylalanine Fmoc-FF Fmoc-FLFL Fmoc-Phe-Phe Fmoc-Phe-Phe-OH Fmoc-PhePhe (Compound 1) Selfassembly modified_plain modified
2 amino acids
Basic Information
TPDB87452
crystalline dipeptide nanobelts Dipeptide 1 DiPhenylalanine Fluor- enylmethyloxycarbonyl (Fmoc) protected diPhenylalanine (Fmoc-Phe- Phe-OH) Fluorenylmethoxycarbonyl-diPhenylalanine Fmoc-diPhenylalanine Fmoc-FF Fmoc-FLFL Fmoc-Phe-Phe Fmoc-Phe-Phe-OH Fmoc-PhePhe (Compound 1)
Selfassembly
Self-assembling and biomaterial peptides
SAPdb Peptipedia
modified_plain
Yes
A 2-aa modified selfassembly peptide sequence curated from SAPdb and Peptipedia, without an available 3D structural model.
Modified, details unspecified
Sequence
Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]-FF
Physicochemical Analysis
C150H213N39O37S4
DQGIKPSWV
F
3282.82
8.26
4
2
13
+1
-1.30
-0.127
28.86
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
4595
139.97
9
Residue Composition
number
1
A
3
R
3
N
0
D
2
C
2
E
0
Q
0
G
1
H
0
I
3
L
0
K
2
M
4
F
0
P
0
S
1
T
0
W
3
Y
0
V
Amino Acid Distribution
A: 1 R: 3 N: 3 D: 0 C: 2 E: 2 Q: 0 G: 0 H: 1 I: 0 L: 3 K: 0 M: 2 F: 4 P: 0 S: 0 T: 1 W: 0 Y: 3 V: 0
Chemical Descriptors
2
C150H213N39O37S4
3282.82
8.26
+1
-1.30
-0.127
Self-Assembly Information 26 records
Record 1 Selfassembly

Source

18070345
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Firm hydrogel assembly
pH: 7 temperature: 37 °C solvent: Dispersion medium= PBS 1x, DMSO (gelling agent)= 25mg/ml concentration: 0.01%
Selfassembly; Nanostructure=Hydrogel; Firm hydrogel assembly; Trigger=pH: 7; temperature: 37 °C; solvent: Dispersion medium= PBS 1x, DMSO (gelling agent)= 25mg/ml; concentration: 0.01%
Confocal Microscopy
Selfassembly
Record 2 Selfassembly

Source

18035858
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanotube
solvent: Aqueous dispersion concentration: 5 mg/ml
Selfassembly; Nanostructure=Nanotube; Trigger=solvent: Aqueous dispersion; concentration: 5 mg/ml
Scanning Electron Microscopy (SEM)
Selfassembly
Record 3 Selfassembly

Source

26295906
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Solid Fibres
solvent: Water+DMSO
Selfassembly; Nanostructure=Nanofiber; Solid Fibres; Trigger=solvent: Water+DMSO
NMR diffusion - ordered spectroscopy (DOSY)
Selfassembly
Record 4 Selfassembly

Source

19705843
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Hydrogel (Tangled Fibrous Nano structure)
pH: 3 - 12 temperature: Room temperature solvent: Water concentration: 5mg/ml
Selfassembly; Nanostructure=Hydrogel; Hydrogel (Tangled Fibrous Nano structure); Trigger=pH: 3 - 12; temperature: Room temperature; solvent: Water; concentration: 5mg/ml
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
Selfassembly
Record 5 Selfassembly

Source

24611281
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Dendritic patterns of Nanofibers
temperature: 20 °C solvent: HFIP (1,1,1,3,3,3-hexafluoro-2-Isopropanol) concentration: 0.5mg/ml
Selfassembly; Nanostructure=Nanofiber; Dendritic patterns of Nanofibers; Trigger=temperature: 20 °C; solvent: HFIP (1,1,1,3,3,3-hexafluoro-2-Isopropanol); concentration: 0.5mg/ml
AFM (Atomic Force Microscopy
Selfassembly
Record 6 Selfassembly

Source

25155031
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanosphere Spherical clusters
temperature: Room temperature solvent: DMSO + Water (in non-equilibrium phase)
Selfassembly; Nanostructure=Nanosphere; Spherical clusters; Trigger=temperature: Room temperature; solvent: DMSO + Water (in non-equilibrium phase)
Transmission Electron Microscopy (TEM)
Selfassembly
Record 7 Selfassembly

Source

25155031
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber Nanofibers
temperature: Room temperature solvent: DMSO + Water (in equilibrium phase)
Selfassembly; Nanostructure=Nanofiber; Nanofibers; Trigger=temperature: Room temperature; solvent: DMSO + Water (in equilibrium phase)
Transmission Electron Microscopy (TEM)
Selfassembly
Record 8 Selfassembly

Source

23566763
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Hydrogel Nanoparticle (HNP)
temperature: 4 °C solvent: DMSO + water + vitamin E-TPGS concentration: 10mg/ml
Selfassembly; Nanostructure=Hydrogel; Hydrogel Nanoparticle (HNP); Trigger=temperature: 4 °C; solvent: DMSO + water + vitamin E-TPGS; concentration: 10mg/ml
Scanning Electron Microscopy (SEM) and DLS (Dynamic Light Scattering)
Selfassembly
Record 9 Selfassembly

Source

21107375
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Transparent gel
pH: 8 temperature: Intial 55 °C heating for 1 hour and followed by cooling at room temperature solvent: Sodium phosphate buffer (pH 8) concentration: 10 mmol/kg
Selfassembly; Nanostructure=Hydrogel; Transparent gel; Trigger=pH: 8; temperature: Intial 55 °C heating for 1 hour and followed by cooling at room temperature; solvent: Sodium phosphate buffer (pH 8); concentration: 10 mmol/kg
AFM (Atomic Force Microscopy) and DLS (Dynamic Light Scattering)
Selfassembly
Record 10 Selfassembly

Source

21612897
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanorod Nanorods
pH: 2 -4 solvent: Aqeous solution of HCl (pH ~4) concentration: 0.8 - 2 mg/ml
Selfassembly; Nanostructure=Nanorod; Nanorods; Trigger=pH: 2 -4; solvent: Aqeous solution of HCl (pH ~4); concentration: 0.8 - 2 mg/ml
AFM (Atomic Force Microscopy)
Selfassembly
Record 11 Selfassembly

Source

22129632
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel
pH: ~ 3 - 4 temperature: Room temperature solvent: Water + NaOH + GdL(glucono-delta-lactone) concentration: 15mM
Selfassembly; Nanostructure=Hydrogel; Trigger=pH: ~ 3 - 4; temperature: Room temperature; solvent: Water + NaOH + GdL(glucono-delta-lactone); concentration: 15mM
Transmission Electron Microscopy (TEM)
Selfassembly
Record 12 Selfassembly

Source

24896538
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Gel (consist of Fibrous network)
pH: 8 temperature: Room temperature solvent: Phosphate buffer concentration: 10mM
Selfassembly; Nanostructure=Hydrogel; Gel (consist of Fibrous network); Trigger=pH: 8; temperature: Room temperature; solvent: Phosphate buffer; concentration: 10mM
Scanning Electron Microscopy (SEM) and AFM (Atomic force Microscopy)
Selfassembly
Record 13 Selfassembly

Source

29285927
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber
pH: 7.5 solvent: Tris-HCl concentration: 15 mg/mL
Selfassembly; Nanostructure=Nanofiber; Trigger=pH: 7.5; solvent: Tris-HCl; concentration: 15 mg/mL
SEM, AFM, TEM
Selfassembly
Record 14 Selfassembly

Source

29303206
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanofiber nanofibers
temperature: 75 °C solvent: DMSO/H2O (xH2O = 0.95), methanol/H2O (xH2O = 0.95 and xH2O = 0.20), pure methanol (no H2O), and pure toluene. concentration: (110 μL /40 μL)
Selfassembly; Nanostructure=Nanofiber; nanofibers; Trigger=temperature: 75 °C; solvent: DMSO/H2O (xH2O = 0.95), methanol/H2O (xH2O = 0.95 and xH2O = 0.20), pure methanol (no H2O), and pure toluene.; concentration: (110 μL /40 μL)
NMR spectroscopy
Selfassembly
Record 15 Selfassembly

Source

30307451
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanostructure nanostructures
pH: 7 temperature: Room temperature solvent: air/water
Selfassembly; Nanostructure=Nanostructure; nanostructures; Trigger=pH: 7; temperature: Room temperature; solvent: air/water
UV-vis spectroscopy and BAM
Selfassembly
Record 16 Selfassembly

Source

30881666
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel
Selfassembly; Nanostructure=Hydrogel
TEM and AFM
Selfassembly
Record 17 Selfassembly

Source

30950622
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanostructure nanomaterials
pH: 2 temperature: 21 °C solvent: dichloromethane concentration: 1mM
Selfassembly; Nanostructure=Nanostructure; nanomaterials; Trigger=pH: 2; temperature: 21 °C; solvent: dichloromethane; concentration: 1mM
UV−Vis Reflection Spectroscopy and Brewster Angle Microscopy
Selfassembly
Record 18 Selfassembly

Source

31179471
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanostructure nanofilaments
pH: 8.5 temperature: 20°C solvent: spermidine concentration: 20 mM,
Selfassembly; Nanostructure=Nanostructure; nanofilaments; Trigger=pH: 8.5; temperature: 20°C; solvent: spermidine; concentration: 20 mM,
Polarized optical microscope (POM), AFM, SEM
Selfassembly
Record 19 Selfassembly

Source

31181152
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Nanostructure nanofiber
solvent: double-distilled water containing different concentrations of metal ions (NaCl, KCl, ZnCl2, CuCl2, FeCl3, AlCl3) concentration: 2.0 mg/mL
Selfassembly; Nanostructure=Nanostructure; nanofiber; Trigger=solvent: double-distilled water containing different concentrations of metal ions (NaCl, KCl, ZnCl2, CuCl2, FeCl3, AlCl3); concentration: 2.0 mg/mL
CD spectra, TEM, FTIR spectra
Selfassembly
Record 20 Selfassembly

Source

27207058
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Hydrogels
pH: 10.5 with 0.1 M NaOH temperature: 37 °C solvent: alginate solution concentration: 20 mM
Selfassembly; Nanostructure=Hydrogel; Hydrogels; Trigger=pH: 10.5 with 0.1 M NaOH; temperature: 37 °C; solvent: alginate solution; concentration: 20 mM
Scanning Electron Microscopy (SEM)
Selfassembly
Record 21 Selfassembly

Source

27507432
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Hydrogels
Selfassembly; Nanostructure=Hydrogel; Hydrogels
TEM, SEM, ESEM,CD and FTIR spectroscopy.
Selfassembly
Record 22 Selfassembly

Source

27582363
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Fibrous hydrogels
pH: 7.4 temperature: 4 °C solvent: buffer (2% glutaraldehyde and 2% paraformaldehyde in 0.1 M sodium cacodylate) concentration: 0.1 M
Selfassembly; Nanostructure=Hydrogel; Fibrous hydrogels; Trigger=pH: 7.4; temperature: 4 °C; solvent: buffer (2% glutaraldehyde and 2% paraformaldehyde in 0.1 M sodium cacodylate); concentration: 0.1 M
Scanning Electron Microscopy (SEM)
Selfassembly
Record 23 Selfassembly

Source

27696352
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Hydrogels
pH: 7.1–7.6 temperature: 60 °C solvent: glucono-d-lactone (GdL) concentration: 18 mM
Selfassembly; Nanostructure=Hydrogel; Hydrogels; Trigger=pH: 7.1–7.6; temperature: 60 °C; solvent: glucono-d-lactone (GdL); concentration: 18 mM
Circular dichroism spectroscopy, FT-IR spectroscopy, NMR spectroscopy, TEM, HPLC, PAD-X and Rheology
Selfassembly
Record 24 Selfassembly

Source

28825801
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel Hydrogels
solvent: DMSO concentration: 100 mg/mL
Selfassembly; Nanostructure=Hydrogel; Hydrogels; Trigger=solvent: DMSO; concentration: 100 mg/mL
TEM, HR-SEM, FTIR
Selfassembly
Record 25 Selfassembly

Source

28955776
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Hydrogel nanofibrous hydrogel
pH: 7.4 solvent: Tris-NaCl EDTA (TNE) buffer
Selfassembly; Nanostructure=Hydrogel; nanofibrous hydrogel; Trigger=pH: 7.4; solvent: Tris-NaCl EDTA (TNE) buffer
ultra- violet (UV) absorption spectroscopy, fluorescence spectroscopy, cir- cular dichroism (CD) study, viscosity measurement and thermal dena- turation analysis of DNA
Selfassembly
Record 26 Selfassembly

Source

22129632
10.1016/j.compbiomed.2021.104391
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly

Self-Assembly

Nanostructure formation
Cryogel
pH: ~ 3 - 4 temperature: (-)12 °C solvent: Water + NaOH + GdL(glucono-delta-lactone) concentration: 15mM
Selfassembly; Nanostructure=Cryogel; Trigger=pH: ~ 3 - 4; temperature: (-)12 °C; solvent: Water + NaOH + GdL(glucono-delta-lactone); concentration: 15mM
Transmission Electron Microscopy (TEM)
Selfassembly
Evidence Records 26 records
Evidence 1 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Firm hydrogel assembly Trigger=pH: 7 temperature: 37 °C solvent: Dispersion medium= PBS 1x, DMSO (gelling agent)= 25mg/ml concentration: 0.01%
Hydrogel Firm hydrogel assembly

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 7 temperature: 37 °C solvent: Dispersion medium= PBS 1x, DMSO (gelling agent)= 25mg/ml concentration: 0.01%
Confocal Microscopy
18070345
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 2 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanotube Trigger=solvent: Aqueous dispersion concentration: 5 mg/ml
Nanotube

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
solvent: Aqueous dispersion concentration: 5 mg/ml
Scanning Electron Microscopy (SEM)
18035858
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 3 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Solid Fibres Trigger=solvent: Water+DMSO
Nanofiber Solid Fibres

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
solvent: Water+DMSO
NMR diffusion - ordered spectroscopy (DOSY)
26295906
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 4 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Hydrogel (Tangled Fibrous Nano structure) Trigger=pH: 3 - 12 temperature: Room temperature solvent: Water concentration: 5mg/ml
Hydrogel Hydrogel (Tangled Fibrous Nano structure)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 3 - 12 temperature: Room temperature solvent: Water concentration: 5mg/ml
Transmission Electron Microscopy (TEM), AFM (Atomic Force Microscopy)
19705843
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 5 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Dendritic patterns of Nanofibers Trigger=temperature: 20 °C solvent: HFIP (1,1,1,3,3,3-hexafluoro-2-Isopropanol) concentration: 0.5mg/ml
Nanofiber Dendritic patterns of Nanofibers

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
temperature: 20 °C solvent: HFIP (1,1,1,3,3,3-hexafluoro-2-Isopropanol) concentration: 0.5mg/ml
AFM (Atomic Force Microscopy
24611281
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 6 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanosphere Spherical clusters Trigger=temperature: Room temperature solvent: DMSO + Water (in non-equilibrium phase)
Nanosphere Spherical clusters

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
temperature: Room temperature solvent: DMSO + Water (in non-equilibrium phase)
Transmission Electron Microscopy (TEM)
25155031
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 7 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Nanofibers Trigger=temperature: Room temperature solvent: DMSO + Water (in equilibrium phase)
Nanofiber Nanofibers

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
temperature: Room temperature solvent: DMSO + Water (in equilibrium phase)
Transmission Electron Microscopy (TEM)
25155031
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 8 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Hydrogel Nanoparticle (HNP) Trigger=temperature: 4 °C solvent: DMSO + water + vitamin E-TPGS concentration: 10mg/ml
Hydrogel Hydrogel Nanoparticle (HNP)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
temperature: 4 °C solvent: DMSO + water + vitamin E-TPGS concentration: 10mg/ml
Scanning Electron Microscopy (SEM) and DLS (Dynamic Light Scattering)
23566763
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 9 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Transparent gel Trigger=pH: 8 temperature: Intial 55 °C heating for 1 hour and followed by cooling at room temperature solvent: Sodium phosphate buffer (pH 8) concentration: 10 mmol/kg
Hydrogel Transparent gel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 8 temperature: Intial 55 °C heating for 1 hour and followed by cooling at room temperature solvent: Sodium phosphate buffer (pH 8) concentration: 10 mmol/kg
AFM (Atomic Force Microscopy) and DLS (Dynamic Light Scattering)
21107375
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 10 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanorod Nanorods Trigger=pH: 2 -4 solvent: Aqeous solution of HCl (pH ~4) concentration: 0.8 - 2 mg/ml
Nanorod Nanorods

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 2 -4 solvent: Aqeous solution of HCl (pH ~4) concentration: 0.8 - 2 mg/ml
AFM (Atomic Force Microscopy)
21612897
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 11 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Trigger=pH: ~ 3 - 4 temperature: Room temperature solvent: Water + NaOH + GdL(glucono-delta-lactone) concentration: 15mM
Hydrogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: ~ 3 - 4 temperature: Room temperature solvent: Water + NaOH + GdL(glucono-delta-lactone) concentration: 15mM
Transmission Electron Microscopy (TEM)
22129632
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 12 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Gel (consist of Fibrous network) Trigger=pH: 8 temperature: Room temperature solvent: Phosphate buffer concentration: 10mM
Hydrogel Gel (consist of Fibrous network)

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 8 temperature: Room temperature solvent: Phosphate buffer concentration: 10mM
Scanning Electron Microscopy (SEM) and AFM (Atomic force Microscopy)
24896538
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 13 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber Trigger=pH: 7.5 solvent: Tris-HCl concentration: 15 mg/mL
Nanofiber

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 7.5 solvent: Tris-HCl concentration: 15 mg/mL
SEM, AFM, TEM
29285927
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 14 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanofiber nanofibers Trigger=temperature: 75 °C solvent: DMSO/H2O (xH2O = 0.95), methanol/H2O (xH2O = 0.95 and xH2O = 0.20), pure methanol (no H2O), and pure toluene. concentration: (110 μL /40 μL)
Nanofiber nanofibers

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
temperature: 75 °C solvent: DMSO/H2O (xH2O = 0.95), methanol/H2O (xH2O = 0.95 and xH2O = 0.20), pure methanol (no H2O), and pure toluene. concentration: (110 μL /40 μL)
NMR spectroscopy
29303206
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 15 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanostructure nanostructures Trigger=pH: 7 temperature: Room temperature solvent: air/water
Nanostructure nanostructures

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 7 temperature: Room temperature solvent: air/water
UV-vis spectroscopy and BAM
30307451
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 16 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel
Hydrogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
TEM and AFM
30881666
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 17 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanostructure nanomaterials Trigger=pH: 2 temperature: 21 °C solvent: dichloromethane concentration: 1mM
Nanostructure nanomaterials

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 2 temperature: 21 °C solvent: dichloromethane concentration: 1mM
UV−Vis Reflection Spectroscopy and Brewster Angle Microscopy
30950622
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 18 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanostructure nanofilaments Trigger=pH: 8.5 temperature: 20°C solvent: spermidine concentration: 20 mM,
Nanostructure nanofilaments

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 8.5 temperature: 20°C solvent: spermidine concentration: 20 mM,
Polarized optical microscope (POM), AFM, SEM
31179471
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 19 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Nanostructure nanofiber Trigger=solvent: double-distilled water containing different concentrations of metal ions (NaCl, KCl, ZnCl2, CuCl2, FeCl3, AlCl3) concentration: 2.0 mg/mL
Nanostructure nanofiber

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
solvent: double-distilled water containing different concentrations of metal ions (NaCl, KCl, ZnCl2, CuCl2, FeCl3, AlCl3) concentration: 2.0 mg/mL
CD spectra, TEM, FTIR spectra
31181152
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 20 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Hydrogels Trigger=pH: 10.5 with 0.1 M NaOH temperature: 37 °C solvent: alginate solution concentration: 20 mM
Hydrogel Hydrogels

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 10.5 with 0.1 M NaOH temperature: 37 °C solvent: alginate solution concentration: 20 mM
Scanning Electron Microscopy (SEM)
27207058
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 21 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Hydrogels
Hydrogel Hydrogels

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
TEM, SEM, ESEM,CD and FTIR spectroscopy.
27507432
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 22 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Fibrous hydrogels Trigger=pH: 7.4 temperature: 4 °C solvent: buffer (2% glutaraldehyde and 2% paraformaldehyde in 0.1 M sodium cacodylate) concentration: 0.1 M
Hydrogel Fibrous hydrogels

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 7.4 temperature: 4 °C solvent: buffer (2% glutaraldehyde and 2% paraformaldehyde in 0.1 M sodium cacodylate) concentration: 0.1 M
Scanning Electron Microscopy (SEM)
27582363
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 23 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Hydrogels Trigger=pH: 7.1–7.6 temperature: 60 °C solvent: glucono-d-lactone (GdL) concentration: 18 mM
Hydrogel Hydrogels

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 7.1–7.6 temperature: 60 °C solvent: glucono-d-lactone (GdL) concentration: 18 mM
Circular dichroism spectroscopy, FT-IR spectroscopy, NMR spectroscopy, TEM, HPLC, PAD-X and Rheology
27696352
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 24 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel Hydrogels Trigger=solvent: DMSO concentration: 100 mg/mL
Hydrogel Hydrogels

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
solvent: DMSO concentration: 100 mg/mL
TEM, HR-SEM, FTIR
28825801
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 25 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Hydrogel nanofibrous hydrogel Trigger=pH: 7.4 solvent: Tris-NaCl EDTA (TNE) buffer
Hydrogel nanofibrous hydrogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: 7.4 solvent: Tris-NaCl EDTA (TNE) buffer
ultra- violet (UV) absorption spectroscopy, fluorescence spectroscopy, cir- cular dichroism (CD) study, viscosity measurement and thermal dena- turation analysis of DNA
28955776
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database.
Evidence 26 Selfassembly

Activity

Nanostructure formation
Selfassembly Nanostructure=Cryogel Trigger=pH: ~ 3 - 4 temperature: (-)12 °C solvent: Water + NaOH + GdL(glucono-delta-lactone) concentration: 15mM
Cryogel

Source & Reference

SAPdb
10.1016/j.compbiomed.2021.104391

Other

N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
pH: ~ 3 - 4 temperature: (-)12 °C solvent: Water + NaOH + GdL(glucono-delta-lactone) concentration: 15mM
Transmission Electron Microscopy (TEM)
22129632
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly
SAPdb ID 1601 nanostr_class=Other but nanostr gives explicit morphology low-detail seed row.
Additional Detail Fields 5 fields
pH: 7 temperature: 37 °C solvent: Dispersion medium= PBS 1x, DMSO (gelling agent)= 25mg/ml concentration: 0.01% solvent: Aqueous dispersion concentration: 5 mg/ml solvent: Water+DMSO pH: 3 - 12 temperature: Room temperature solvent: Water concentration: 5mg/ml temperature: 20 °C solvent: HFIP (1,1,1,3,3,3-hexafluoro-2-Isopropanol) concentration: 0.5mg/ml solvent: DMSO + Water (in non-equilibrium phase) solvent: DMSO + Water (in equilibrium phase) temperature: 4 °C solvent: DMSO + water + vitamin E-TPGS concentration: 10mg/ml pH: 8 temperature: Intial 55 °C heating for 1 hour and followed by cooling at room temperature solvent: Sodium phosphate buffer (pH 8) concentration: 10 mmol/kg pH: 2 -4 solvent: Aqeous solution of HCl (pH ~4) concentration: 0.8 - 2 mg/ml pH: ~ 3 - 4 solvent: Water + NaOH + GdL(glucono-delta-lactone) concentration: 15mM solvent: Phosphate buffer concentration: 10mM pH: 7.5 solvent: Tris-HCl concentration: 15 mg/mL temperature: 75 °C solvent: DMSO/H2O (xH2O = 0.95), methanol/H2O (xH2O = 0.95 and xH2O = 0.20), pure methanol (no H2O), and pure toluene. concentration: (110 μL /40 μL) solvent: air/water pH: 2 temperature: 21 °C solvent: dichloromethane concentration: 1mM pH: 8.5 temperature: 20°C solvent: spermidine concentration: 20 mM, solvent: double-distilled water containing different concentrations of metal ions (NaCl, KCl, ZnCl2, CuCl2, FeCl3, AlCl3) concentration: 2.0 mg/mL pH: 10.5 with 0.1 M NaOH solvent: alginate solution concentration: 20 mM pH: 7.4 temperature: 4 °C solvent: buffer (2% glutaraldehyde and 2% paraformaldehyde in 0.1 M sodium cacodylate) concentration: 0.1 M pH: 7.1–7.6 temperature: 60 °C solvent: glucono-d-lactone (GdL) concentration: 18 mM solvent: DMSO concentration: 100 mg/mL solvent: Tris-NaCl EDTA (TNE) buffer temperature: (-)12 °C
N-terminal: Fmoc [or N-(fluorenyl-9-methoxycarbonyl)]
SAPdb ID NA low-detail seed row from experimentally curated self-assembly database. SAPdb ID 1601 nanostr_class=Other but nanostr gives explicit morphology low-detail seed row.
18070345 18035858 26295906 19705843 24611281 25155031 23566763 21107375 21612897 22129632 24896538 29285927 29303206 30307451 30881666 30950622 31179471 31181152 27207058 27507432 27582363 27696352 28825801 28955776
SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly