TPDB

3D PDB MODEL

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TPDB ID TPDB65143

Activity

Tumor T cell antigens

Activity_category_statistics

Cancer-related peptides

Database_Source

ENCAP iTTCA-Hybrid iTTCA-RF LYnet-master

Sequence_Type

standard

Has_Modification No

Description A 10-aa standard natural tumor t cell antigens peptide sequence curated from ENCAP, iTTCA-Hybrid, iTTCA-RF, and other sources, with an available 3D structural model.

Sequence

YMIMVKCWMI

FASTA

>TPDB65143|Tumor T cell antigens|length=10
YMIMVKCWMI

Formula C61H96N12O12S4

Absent Amino Acids ARNDEQGHLFPST

Common Amino Acids M

Mass 1317.75

PI 8.88

Basic Residues 1

Acidic Residues 0

Hydrophobic Residues 8

Net Charge +1

Boman Index -3.28

Hydrophobicity 1.530

Aliphatic Index 107.00

Half Life

Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min

Extinction Coefficient Cystines 6990

Absorbance 280nm 530.45

Polar Residues 2

number

0

A

0

R

0

N

0

D

1

C

0

E

0

Q

0

G

0

H

2

I

0

L

1

K

3

M

0

F

0

P

0

S

0

T

1

W

1

Y

1

V

Amino Acid Distribution

A: 0 R: 0 N: 0 D: 0 C: 1 E: 0 Q: 0 G: 0 H: 0 I: 2 L: 0 K: 1 M: 3 F: 0 P: 0 S: 0 T: 0 W: 1 Y: 1 V: 1

Length

10

Formula

C61H96N12O12S4

Mass

1317.75

PI

8.88

Net Charge

+1

Boman Index

-3.28

Hydrophobicity

1.530

Evidence 1 Activity

Activity

Detail Source Activity Tumor T cell antigens

Assay & Model

Experimental Method in vitro

Source & Reference

Database Source NA

Source TANTIGEN/TADB

Other

Record Type T-cell epitope

HLA Allele A*0201

Epitope Type Overexpressed antigen

Genomic Origin Overexpressed antigen

Evidence 2 Activity

Activity

Detail Source Activity Tumor T cell antigens

Assay & Model

Experimental Method in vitro

Source & Reference

Database Source NA

Source TANTIGEN/TADB

Other

Record Type T-cell epitope

HLA Allele A*0202

Epitope Type Overexpressed antigen

Genomic Origin Overexpressed antigen

Evidence 3 Activity

Activity

Detail Source Activity Tumor T cell antigens

Assay & Model

Experimental Method in vitro

Source & Reference

Database Source NA

Source TANTIGEN/TADB

Other

Record Type T-cell epitope

HLA Allele A*0203

Epitope Type Overexpressed antigen

Genomic Origin Overexpressed antigen

Evidence 4 Activity

Activity

Detail Source Activity Tumor T cell antigens

Assay & Model

Experimental Method in vitro

Source & Reference

Database Source NA

Source TANTIGEN/TADB

Other

Record Type T-cell epitope

HLA Allele A*0206

Epitope Type Overexpressed antigen

Genomic Origin Overexpressed antigen

Evidence 5 Activity

Activity

Detail Source Activity Tumor T cell antigens

Assay & Model

Experimental Method in vitro

Source & Reference

Database Source NA

Source TANTIGEN/TADB

Other

Record Type T-cell epitope

HLA Allele A*6802

Epitope Type Overexpressed antigen

Genomic Origin Overexpressed antigen

Epitope_Type

Overexpressed antigen

Genomic_Origin

Overexpressed antigen

HLA_Allele

A*0201 A*0202 A*0203 A*0206 A*6802