TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB60527

Activity

Neuropeptide

Activity_category_statistics

Neuroactive peptides

Database_Source

Peptipedia

Sequence_Type

modified_plain

Has_Modification Yes

Description A 26-aa modified neuropeptide peptide sequence curated from Peptipedia, with an available 3D structural model.

Modification

Modified, details unspecified

Sequence

YKVDEDLQGAGGIQSRGYFFFRPRNZ

FASTA

>TPDB60527|Neuropeptide|length=26
YKVDEDLQGAGGIQSRGYFFFRPRNZ

Formula C132H194N38O38

Absent Amino Acids CHMTW

Common Amino Acids G

Mass 2921.22

PI 9.56

Basic Residues 4

Acidic Residues 3

Hydrophobic Residues 9

Net Charge +1

Boman Index 3.86

Hydrophobicity -0.858

Aliphatic Index 45.00

Half Life

Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min

Extinction Coefficient Cystines 2980

Absorbance 280nm 102.01

Polar Residues 6

number

1

A

3

R

1

N

2

D

0

C

1

E

2

Q

4

G

0

H

1

I

1

L

1

K

0

M

3

F

1

P

1

S

0

T

0

W

2

Y

1

V

Amino Acid Distribution

A: 1 R: 3 N: 1 D: 2 C: 0 E: 1 Q: 2 G: 4 H: 0 I: 1 L: 1 K: 1 M: 0 F: 3 P: 1 S: 1 T: 0 W: 0 Y: 2 V: 1

Length

26

Formula

C132H194N38O38

Mass

2921.22

PI

9.56

Net Charge

+1

Boman Index

3.86

Hydrophobicity

-0.858

Evidence 1 Activity

Source & Reference

Database Source NA