TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB58053

Activity

Neuropeptide

Activity_category_statistics

Neuroactive peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 89-aa standard natural neuropeptide peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

RDVSTSQAVLPDDFPRYPVGKFFQYDTWRQSAGRLRRGLPALLRARRGRMLAKELKEFREAKRHRPLIVLPPKDPAHGGASSEMSSNHQ

FASTA

>TPDB58053|Neuropeptide|length=89
RDVSTSQAVLPDDFPRYPVGKFFQYDTWRQSAGRLRRGLPALLRARRGRMLAKELKEFREAKRHRPLIVLPPKDPAHGGASSEMSSNHQ

Formula C450H721N145O124S2

Absent Amino Acids C

Common Amino Acids R

Mass 10210.69

PI 11.52

Basic Residues 21

Acidic Residues 9

Hydrophobic Residues 31

Net Charge +9

Boman Index 25.04

Hydrophobicity -0.870

Aliphatic Index 65.84

Half Life

Mammalian: 1 hour Yeast: 2 min E.coli: 2 min

Extinction Coefficient Cystines 8480

Absorbance 280nm 83.05

Polar Residues 16

number

8

A

13

R

1

N

5

D

0

C

4

E

4

Q

6

G

3

H

1

I

9

L

5

K

2

M

4

F

8

P

7

S

2

T

1

W

2

Y

4

V

Amino Acid Distribution

A: 8 R: 13 N: 1 D: 5 C: 0 E: 4 Q: 4 G: 6 H: 3 I: 1 L: 9 K: 5 M: 2 F: 4 P: 8 S: 7 T: 2 W: 1 Y: 2 V: 4

Length

89

Formula

C450H721N145O124S2

Mass

10210.69

PI

11.52

Net Charge

+9

Boman Index

25.04

Hydrophobicity

-0.870

Evidence 1 Activity

Source & Reference

Database Source NA