TPDB

3D PDB MODEL

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TPDB ID TPDB55172

Activity

Neuropeptide

Activity_category_statistics

Neuroactive peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 145-aa standard natural neuropeptide peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

ILLSASKSIRNLEDDIVFNTFRMGKAFQKEDTAERSVVAPSLEQYKNDESGFMNDDDNKNSKNTGSKQNLVTHGLPLSLAVKPYLALKGSVAVFPAENGVQNTESTQEKREIGDEENSAKFPIGRRDFDMLRCMLGRVYRPCWQV

FASTA

>TPDB55172|Neuropeptide|length=145
ILLSASKSIRNLEDDIVFNTFRMGKAFQKEDTAERSVVAPSLEQYKNDESGFMNDDDNKNSKNTGSKQNLVTHGLPLSLAVKPYLALKGSVAVFPAENGVQNTESTQEKREIGDEENSAKFPIGRRDFDMLRCMLGRVYRPCWQV

Formula C709H1129N203O226S6

Absent Amino Acids

Common Amino Acids LS

Mass 16305.35

PI 5.81

Basic Residues 21

Acidic Residues 21

Hydrophobic Residues 51

Net Charge -1

Boman Index 43.87

Hydrophobicity -0.641

Aliphatic Index 71.93

Half Life

Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour

Extinction Coefficient Cystines 10095

Absorbance 280nm 61.91

Polar Residues 40

number

9

A

9

R

11

N

10

D

2

C

11

E

6

Q

9

G

1

H

5

I

12

L

11

K

4

M

7

F

6

P

12

S

6

T

1

W

3

Y

10

V

Amino Acid Distribution

A: 9 R: 9 N: 11 D: 10 C: 2 E: 11 Q: 6 G: 9 H: 1 I: 5 L: 12 K: 11 M: 4 F: 7 P: 6 S: 12 T: 6 W: 1 Y: 3 V: 10

Length

145

Formula

C709H1129N203O226S6

Mass

16305.35

PI

5.81

Net Charge

-1

Boman Index

43.87

Hydrophobicity

-0.641

Evidence 1 Activity

Source & Reference

Database Source NA