TPDB

3D PDB MODEL

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TPDB ID TPDB50465

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 100-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MSQERLLKVLKAPHISEKATNNAEKSNTIVFKVALDANKVEITNAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDWKKAYVTLQEGQSLDFVEGAAE

FASTA

>TPDB50465|Antifungal|length=100
MSQERLLKVLKAPHISEKATNNAEKSNTIVFKVALDANKVEITNAVEQLFEVKVDSVRTVVVKGKTKRRGAKIGRRSDWKKAYVTLQEGQSLDFVEGAAE

Formula C491H819N143O149S1

Absent Amino Acids C

Common Amino Acids KV

Mass 11141.83

PI 10.24

Basic Residues 20

Acidic Residues 13

Hydrophobic Residues 40

Net Charge +6

Boman Index 35.97

Hydrophobicity -0.452

Aliphatic Index 90.60

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6990

Absorbance 280nm 62.74

Polar Residues 22

number

10

A

6

R

5

N

4

D

0

C

9

E

4

Q

5

G

1

H

4

I

7

L

13

K

1

M

3

F

1

P

6

S

6

T

1

W

1

Y

13

V

Amino Acid Distribution

A: 10 R: 6 N: 5 D: 4 C: 0 E: 9 Q: 4 G: 5 H: 1 I: 4 L: 7 K: 13 M: 1 F: 3 P: 1 S: 6 T: 6 W: 1 Y: 1 V: 13

Length

100

Formula

C491H819N143O149S1

Mass

11141.83

PI

10.24

Net Charge

+6

Boman Index

35.97

Hydrophobicity

-0.452

Evidence 1 Activity

Source & Reference

Database Source NA