TPDB

3D PDB MODEL

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TPDB ID TPDB50464

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 61-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MSKGTPSMGKRNKGSYHIRCRRCGRRAYHVRKKRCAACGFPNKRMRKYSWQNKKVNGKRIK

FASTA

>TPDB50464|Antifungal|length=61
MSKGTPSMGKRNKGSYHIRCRRCGRRAYHVRKKRCAACGFPNKRMRKYSWQNKKVNGKRIK

Formula C308H519N115O75S7

Absent Amino Acids DEL

Common Amino Acids RK

Mass 7257.65

PI 12.04

Basic Residues 24

Acidic Residues 0

Hydrophobic Residues 15

Net Charge +22

Boman Index 17.16

Hydrophobicity -1.464

Aliphatic Index 27.21

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 10220

Absorbance 280nm 140.82

Polar Residues 17

number

3

A

11

R

4

N

0

D

4

C

0

E

1

Q

6

G

2

H

2

I

0

L

11

K

3

M

1

F

2

P

4

S

1

T

1

W

3

Y

2

V

Amino Acid Distribution

A: 3 R: 11 N: 4 D: 0 C: 4 E: 0 Q: 1 G: 6 H: 2 I: 2 L: 0 K: 11 M: 3 F: 1 P: 2 S: 4 T: 1 W: 1 Y: 3 V: 2

Length

61

Formula

C308H519N115O75S7

Mass

7257.65

PI

12.04

Net Charge

+22

Boman Index

17.16

Hydrophobicity

-1.464

Evidence 1 Activity

Source & Reference

Database Source NA