TPDB

3D PDB MODEL

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TPDB ID TPDB50463

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 46-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MSKRTLEGSHRKKVRKSGFLSRSQSPTGRRILKARRKKGRKMLVKY

FASTA

>TPDB50463|Antifungal|length=46
MSKRTLEGSHRKKVRKSGFLSRSQSPTGRRILKARRKKGRKMLVKY

Formula C234H417N85O59S2

Absent Amino Acids NDCW

Common Amino Acids RK

Mass 5429.54

PI 12.71

Basic Residues 19

Acidic Residues 1

Hydrophobic Residues 12

Net Charge +17

Boman Index 16.20

Hydrophobicity -1.304

Aliphatic Index 57.17

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 1490

Absorbance 280nm 27.44

Polar Residues 10

number

1

A

9

R

0

N

0

D

0

C

1

E

1

Q

4

G

1

H

1

I

4

L

9

K

2

M

1

F

1

P

6

S

2

T

0

W

1

Y

2

V

Amino Acid Distribution

A: 1 R: 9 N: 0 D: 0 C: 0 E: 1 Q: 1 G: 4 H: 1 I: 1 L: 4 K: 9 M: 2 F: 1 P: 1 S: 6 T: 2 W: 0 Y: 1 V: 2

Length

46

Formula

C234H417N85O59S2

Mass

5429.54

PI

12.71

Net Charge

+17

Boman Index

16.20

Hydrophobicity

-1.304

Evidence 1 Activity

Source & Reference

Database Source NA