TPDB

3D PDB MODEL

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TPDB ID TPDB50452

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 100-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MSEKRNIRDHKRRLLAAKYELRRKLYKAFCKDSDLPSDMRDKLRYKLSKLPRNSSFARVRNRCISTGRPRSVYELFRISRIVFRSLASRGPLMGIKKSSW

FASTA

>TPDB50452|Antifungal|length=100
MSEKRNIRDHKRRLLAAKYELRRKLYKAFCKDSDLPSDMRDKLRYKLSKLPRNSSFARVRNRCISTGRPRSVYELFRISRIVFRSLASRGPLMGIKKSSW

Formula C526H877N171O138S5

Absent Amino Acids Q

Common Amino Acids R

Mass 11965.11

PI 11.80

Basic Residues 30

Acidic Residues 8

Hydrophobic Residues 36

Net Charge +21

Boman Index 23.91

Hydrophobicity -0.826

Aliphatic Index 76.10

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 11585

Absorbance 280nm 96.82

Polar Residues 23

number

5

A

18

R

3

N

5

D

2

C

3

E

0

Q

3

G

1

H

5

I

11

L

11

K

3

M

4

F

4

P

13

S

1

T

1

W

4

Y

3

V

Amino Acid Distribution

A: 5 R: 18 N: 3 D: 5 C: 2 E: 3 Q: 0 G: 3 H: 1 I: 5 L: 11 K: 11 M: 3 F: 4 P: 4 S: 13 T: 1 W: 1 Y: 4 V: 3

Length

100

Formula

C526H877N171O138S5

Mass

11965.11

PI

11.80

Net Charge

+21

Boman Index

23.91

Hydrophobicity

-0.826

Evidence 1 Activity

Source & Reference

Database Source NA