TPDB

3D PDB MODEL

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TPDB ID TPDB50386

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 98-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MLNFVRIFLPFLKYQVFTDKTNDLLKYNIYVFDVDKKLNKLQIKNIIEYIFNIKIYSINTYIKNNKYCCFNKIKGLKTNYKRAFIRLKSVNIIPYFSC

FASTA

>TPDB50386|Antifungal|length=98
MLNFVRIFLPFLKYQVFTDKTNDLLKYNIYVFDVDKKLNKLQIKNIIEYIFNIKIYSINTYIKNNKYCCFNKIKGLKTNYKRAFIRLKSVNIIPYFSC

Formula C566H882N136O139S4

Absent Amino Acids HW

Common Amino Acids K

Mass 11944.30

PI 10.13

Basic Residues 18

Acidic Residues 5

Hydrophobic Residues 48

Net Charge +13

Boman Index 3.50

Hydrophobicity -0.045

Aliphatic Index 107.35

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 13535

Absorbance 280nm 113.32

Polar Residues 33

number

1

A

3

R

12

N

4

D

3

C

1

E

2

Q

1

G

0

H

14

I

9

L

15

K

1

M

9

F

2

P

3

S

4

T

0

W

9

Y

5

V

Amino Acid Distribution

A: 1 R: 3 N: 12 D: 4 C: 3 E: 1 Q: 2 G: 1 H: 0 I: 14 L: 9 K: 15 M: 1 F: 9 P: 2 S: 3 T: 4 W: 0 Y: 9 V: 5

Length

98

Formula

C566H882N136O139S4

Mass

11944.30

PI

10.13

Net Charge

+13

Boman Index

3.50

Hydrophobicity

-0.045

Evidence 1 Activity

Source & Reference

Database Source NA