TPDB

3D PDB MODEL

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TPDB ID TPDB50263

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 99-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MFNSIKRDLKRRKLYKKYESKRLLYKALISDCNLNQDLRFILTQKLNKLPRNSSQVRVKNRCILTGRGHSVYKFCRISRIKFRDLANQGLIQGCVKSSW

FASTA

>TPDB50263|Antifungal|length=99
MFNSIKRDLKRRKLYKKYESKRLLYKALISDCNLNQDLRFILTQKLNKLPRNSSQVRVKNRCILTGRGHSVYKFCRISRIKFRDLANQGLIQGCVKSSW

Formula C524H873N163O137S5

Absent Amino Acids

Common Amino Acids LK

Mass 11809.01

PI 11.16

Basic Residues 26

Acidic Residues 5

Hydrophobic Residues 36

Net Charge +20

Boman Index 17.44

Hydrophobicity -0.615

Aliphatic Index 92.53

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 11710

Absorbance 280nm 99.16

Polar Residues 31

number

2

A

12

R

7

N

4

D

4

C

1

E

5

Q

4

G

1

H

7

I

13

L

13

K

1

M

4

F

1

P

9

S

2

T

1

W

4

Y

4

V

Amino Acid Distribution

A: 2 R: 12 N: 7 D: 4 C: 4 E: 1 Q: 5 G: 4 H: 1 I: 7 L: 13 K: 13 M: 1 F: 4 P: 1 S: 9 T: 2 W: 1 Y: 4 V: 4

Length

99

Formula

C524H873N163O137S5

Mass

11809.01

PI

11.16

Net Charge

+20

Boman Index

17.44

Hydrophobicity

-0.615

Evidence 1 Activity

Source & Reference

Database Source NA