TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB50261

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 89-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MFFVRSYCLYGFCVRFCFVFLCIYVSPRLPSSGNRRVYVVCFNLYSFVIYCFLFGCCVICYSQSFYFLCEGGGFVDLPCIKLYVRVPIA

FASTA

>TPDB50261|Antifungal|length=89
MFFVRSYCLYGFCVRFCFVFLCIYVSPRLPSSGNRRVYVVCFNLYSFVIYCFLFGCCVICYSQSFYFLCEGGGFVDLPCIKLYVRVPIA

Formula C494H717N111O113S12

Absent Amino Acids HTW

Common Amino Acids F

Mass 10403.52

PI 8.22

Basic Residues 7

Acidic Residues 2

Hydrophobic Residues 49

Net Charge +5

Boman Index -18.09

Hydrophobicity 1.083

Aliphatic Index 97.19

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 14035

Absorbance 280nm 134.91

Polar Residues 30

number

1

A

6

R

2

N

1

D

11

C

1

E

1

Q

6

G

0

H

5

I

8

L

1

K

1

M

13

F

4

P

7

S

0

T

0

W

9

Y

12

V

Amino Acid Distribution

A: 1 R: 6 N: 2 D: 1 C: 11 E: 1 Q: 1 G: 6 H: 0 I: 5 L: 8 K: 1 M: 1 F: 13 P: 4 S: 7 T: 0 W: 0 Y: 9 V: 12

Length

89

Formula

C494H717N111O113S12

Mass

10403.52

PI

8.22

Net Charge

+5

Boman Index

-18.09

Hydrophobicity

1.083

Evidence 1 Activity

Source & Reference

Database Source NA