TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB50217

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 100-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVTSLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLSGHILREMVHTCLLPGATRSSW

FASTA

>TPDB50217|Antifungal|length=100
MARKSLIQREKKRRNLEQKYHLIRRSSKQEIRKVTSLSDKWEIHGKLQSPPRNSAPARLHRRCFLTGRPRANIRDFGLSGHILREMVHTCLLPGATRSSW

Formula C512H853N175O137S4

Absent Amino Acids

Common Amino Acids R

Mass 11780.74

PI 12.08

Basic Residues 29

Acidic Residues 7

Hydrophobic Residues 31

Net Charge +17

Boman Index 29.41

Hydrophobicity -0.915

Aliphatic Index 77.10

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12615

Absorbance 280nm 107.08

Polar Residues 24

number

5

A

16

R

3

N

2

D

2

C

5

E

4

Q

5

G

5

H

6

I

11

L

8

K

2

M

2

F

5

P

10

S

4

T

2

W

1

Y

2

V

Amino Acid Distribution

A: 5 R: 16 N: 3 D: 2 C: 2 E: 5 Q: 4 G: 5 H: 5 I: 6 L: 11 K: 8 M: 2 F: 2 P: 5 S: 10 T: 4 W: 2 Y: 1 V: 2

Length

100

Formula

C512H853N175O137S4

Mass

11780.74

PI

12.08

Net Charge

+17

Boman Index

29.41

Hydrophobicity

-0.915

Evidence 1 Activity

Source & Reference

Database Source NA