TPDB

3D PDB MODEL

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TPDB ID TPDB50192

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 100-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MAKKNMIQREIKREKLEKKYYLKRLAIKEQLKKTTSFAEKIELRQKLQEMPRNSAPVRSRNRCWLTGRSRGYYRDFGLSRHVFREMSHECLLPGVTKSSW

FASTA

>TPDB50192|Antifungal|length=100
MAKKNMIQREIKREKLEKKYYLKRLAIKEQLKKTTSFAEKIELRQKLQEMPRNSAPVRSRNRCWLTGRSRGYYRDFGLSRHVFREMSHECLLPGVTKSSW

Formula C534H877N165O144S6

Absent Amino Acids

Common Amino Acids RK

Mass 12105.22

PI 10.89

Basic Residues 28

Acidic Residues 10

Hydrophobic Residues 34

Net Charge +16

Boman Index 31.74

Hydrophobicity -1.009

Aliphatic Index 67.30

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 17085

Absorbance 280nm 141.14

Polar Residues 25

number

4

A

13

R

3

N

1

D

2

C

9

E

4

Q

4

G

2

H

4

I

10

L

13

K

4

M

3

F

3

P

8

S

4

T

2

W

4

Y

3

V

Amino Acid Distribution

A: 4 R: 13 N: 3 D: 1 C: 2 E: 9 Q: 4 G: 4 H: 2 I: 4 L: 10 K: 13 M: 4 F: 3 P: 3 S: 8 T: 4 W: 2 Y: 4 V: 3

Length

100

Formula

C534H877N165O144S6

Mass

12105.22

PI

10.89

Net Charge

+16

Boman Index

31.74

Hydrophobicity

-1.009

Evidence 1 Activity

Source & Reference

Database Source NA