TPDB

3D PDB MODEL

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TPDB ID TPDB50182

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 84-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

MAKSTKRRPAPEKPAKARKCVFCAKKNQQIDYKDTTLLRTYISERGKIRARRVTGNCVQHQRDIAIAVKNAREVALLPFTSSAR

FASTA

>TPDB50182|Antifungal|length=84
MAKSTKRRPAPEKPAKARKCVFCAKKNQQIDYKDTTLLRTYISERGKIRARRVTGNCVQHQRDIAIAVKNAREVALLPFTSSAR

Formula C413H702N136O116S4

Absent Amino Acids W

Common Amino Acids AR

Mass 9557.20

PI 11.24

Basic Residues 22

Acidic Residues 6

Hydrophobic Residues 30

Net Charge +15

Boman Index 25.88

Hydrophobicity -0.725

Aliphatic Index 72.14

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 3105

Absorbance 280nm 32.49

Polar Residues 22

number

11

A

11

R

3

N

3

D

3

C

3

E

4

Q

2

G

1

H

5

I

4

L

10

K

1

M

2

F

4

P

4

S

6

T

0

W

2

Y

5

V

Amino Acid Distribution

A: 11 R: 11 N: 3 D: 3 C: 3 E: 3 Q: 4 G: 2 H: 1 I: 5 L: 4 K: 10 M: 1 F: 2 P: 4 S: 4 T: 6 W: 0 Y: 2 V: 5

Length

84

Formula

C413H702N136O116S4

Mass

9557.20

PI

11.24

Net Charge

+15

Boman Index

25.88

Hydrophobicity

-0.725

Evidence 1 Activity

Source & Reference

Database Source NA