TPDB

3D PDB MODEL

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TPDB ID TPDB50043

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 57-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

AVPKKRTSKAKKNARKSVWKKKADKAAKKSLSLAKSVLQGKTTSFVYSLYIDELFSI

FASTA

>TPDB50043|Antifungal|length=57
AVPKKRTSKAKKNARKSVWKKKADKAAKKSLSLAKSVLQGKTTSFVYSLYIDELFSI

Formula C291H490N80O79

Absent Amino Acids CHM

Common Amino Acids K

Mass 6373.58

PI 10.93

Basic Residues 16

Acidic Residues 3

Hydrophobic Residues 23

Net Charge +13

Boman Index 12.56

Hydrophobicity -0.563

Aliphatic Index 80.53

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8480

Absorbance 280nm 133.05

Polar Residues 15

number

7

A

2

R

1

N

2

D

0

C

1

E

1

Q

1

G

0

H

2

I

5

L

14

K

0

M

2

F

1

P

8

S

3

T

1

W

2

Y

4

V

Amino Acid Distribution

A: 7 R: 2 N: 1 D: 2 C: 0 E: 1 Q: 1 G: 1 H: 0 I: 2 L: 5 K: 14 M: 0 F: 2 P: 1 S: 8 T: 3 W: 1 Y: 2 V: 4

Length

57

Formula

C291H490N80O79

Mass

6373.58

PI

10.93

Net Charge

+13

Boman Index

12.56

Hydrophobicity

-0.563

Evidence 1 Activity

Source & Reference

Database Source NA