TPDB

3D PDB MODEL

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TPDB ID TPDB49999

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 100-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW

FASTA

>TPDB49999|Antifungal|length=100
AKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNAVLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW

Formula C499H832N164O139S3

Absent Amino Acids

Common Amino Acids R

Mass 11449.29

PI 11.59

Basic Residues 26

Acidic Residues 10

Hydrophobic Residues 37

Net Charge +15

Boman Index 30.05

Hydrophobicity -0.822

Aliphatic Index 73.30

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12490

Absorbance 280nm 109.09

Polar Residues 19

number

12

A

14

R

3

N

5

D

1

C

5

E

4

Q

5

G

1

H

4

I

8

L

11

K

2

M

3

F

4

P

8

S

2

T

2

W

1

Y

5

V

Amino Acid Distribution

A: 12 R: 14 N: 3 D: 5 C: 1 E: 5 Q: 4 G: 5 H: 1 I: 4 L: 8 K: 11 M: 2 F: 3 P: 4 S: 8 T: 2 W: 2 Y: 1 V: 5

Length

100

Formula

C499H832N164O139S3

Mass

11449.29

PI

11.59

Net Charge

+15

Boman Index

30.05

Hydrophobicity

-0.822

Evidence 1 Activity

Source & Reference

Database Source NA