TPDB

3D PDB MODEL

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TPDB ID TPDB49998

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 100-aa standard natural antifungal peptide sequence curated from Peptipedia, with an available 3D structural model.

Sequence

AKQSMKARDVKRVKLAEKFYAKRVELKKIISDVNASDEDRWDAVLKLQTLPRDSSPSRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW

FASTA

>TPDB49998|Antifungal|length=100
AKQSMKARDVKRVKLAEKFYAKRVELKKIISDVNASDEDRWDAVLKLQTLPRDSSPSRQRNRCRQTGRPHGVLRKFGLSRIKVREAAMRGEIPGLKKASW

Formula C503H849N165O140S3

Absent Amino Acids

Common Amino Acids R

Mass 11544.48

PI 11.44

Basic Residues 28

Acidic Residues 11

Hydrophobic Residues 35

Net Charge +16

Boman Index 34.62

Hydrophobicity -0.898

Aliphatic Index 76.10

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12490

Absorbance 280nm 108.19

Polar Residues 18

number

9

A

14

R

2

N

6

D

1

C

5

E

4

Q

5

G

1

H

4

I

8

L

13

K

2

M

2

F

4

P

8

S

2

T

2

W

1

Y

7

V

Amino Acid Distribution

A: 9 R: 14 N: 2 D: 6 C: 1 E: 5 Q: 4 G: 5 H: 1 I: 4 L: 8 K: 13 M: 2 F: 2 P: 4 S: 8 T: 2 W: 2 Y: 1 V: 7

Length

100

Formula

C503H849N165O140S3

Mass

11544.48

PI

11.44

Net Charge

+16

Boman Index

34.62

Hydrophobicity

-0.898

Evidence 1 Activity

Source & Reference

Database Source NA