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Peptide record

TPDB49951

Antifungal standard
143 amino acids
Basic Information
3D PDB MODEL
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TPDB49951
Antifungal
Anti-infective peptides
dbAMP
standard
No
A 143-aa standard-residue antifungal peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
PAGPFGIPKCRKEFQQAQHLRACQQWLHKQAMQSGSGPSLALYGEFEDDMENPQGPQQRPPLLQQCCNELHQEEPLCVCPTLKGASKAVKQQVRQQLGQQGQQGPQVQHVISRIYQTATHLPKVCNIPQVSVCPFKKTMPGPS
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C691H1098N206O203S11
Q
15892.24
8.51
19
9
41
+5
1.70
-0.701
62.73
Mammalian: >20 hour Yeast: >20 hour E.coli: ?
8980
0.57
49
Residue Composition
number
8
A
5
R
3
N
2
D
8
C
7
E
25
Q
11
G
5
H
4
I
11
L
9
K
3
M
4
F
16
P
7
S
4
T
1
W
2
Y
8
V
Amino Acid Distribution
A: 8 R: 5 N: 3 D: 2 C: 8 E: 7 Q: 25 G: 11 H: 5 I: 4 L: 11 K: 9 M: 3 F: 4 P: 16 S: 7 T: 4 W: 1 Y: 2 V: 8
Chemical Descriptors
143 reviewed residue count
C691H1098N206O203S11 sequence-only estimate (linear, free termini)
15892.24 sequence-only estimate (linear, free termini)
8.51 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
1.70 sequence-only estimate (linear, free termini)
-0.701 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antifungal
dbAMP classified under the Anti-fungal function class.