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Peptide record

TPDB49857

Antifungal standard
40 amino acids
Basic Information
3D PDB MODEL
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TPDB49857
Antifungal
Anti-infective peptides
dbAMP
standard
No
A 40-aa standard-residue antifungal peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
QDNSRYTHFLTQHYDAKPQGRDDRYSESIMRRRGLTSPSK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C203H318N68O66S1
CWV
R
4799.23
10.14
10
5
9
+3
4.41
-1.703
31.75
Mammalian: 0.8 hour Yeast: 10 min E.coli: >10 hour
4470
0.93
15
Residue Composition
number
1
A
6
R
1
N
4
D
0
C
1
E
3
Q
2
G
2
H
1
I
2
L
2
K
1
M
1
F
2
P
5
S
3
T
0
W
3
Y
0
V
Amino Acid Distribution
A: 1 R: 6 N: 1 D: 4 C: 0 E: 1 Q: 3 G: 2 H: 2 I: 1 L: 2 K: 2 M: 1 F: 1 P: 2 S: 5 T: 3 W: 0 Y: 3 V: 0
Chemical Descriptors
40 reviewed residue count
C203H318N68O66S1 sequence-only estimate (linear, free termini)
4799.23 sequence-only estimate (linear, free termini)
10.14 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
4.41 sequence-only estimate (linear, free termini)
-1.703 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antifungal
dbAMP classified under the Anti-fungal function class.