TPDB

3D PDB MODEL

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TPDB ID TPDB49842

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 38-aa standard natural antifungal peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

CCRNTWARNCYNVCRLPGTISREICAKKCDKIISGTTC

FASTA

>TPDB49842|Antifungal|length=38
CCRNTWARNCYNVCRLPGTISREICAKKCDKIISGTTC

Formula C176H295N57O53S7

Absent Amino Acids QHMF

Common Amino Acids C

Mass 4282.05

PI 8.68

Basic Residues 7

Acidic Residues 2

Hydrophobic Residues 10

Net Charge +5

Boman Index 5.47

Hydrophobicity -0.239

Aliphatic Index 64.21

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 7365

Absorbance 280nm 172.00

Polar Residues 17

number

2

A

4

R

3

N

1

D

7

C

1

E

0

Q

2

G

0

H

4

I

1

L

3

K

0

M

0

F

1

P

2

S

4

T

1

W

1

Y

1

V

Amino Acid Distribution

A: 2 R: 4 N: 3 D: 1 C: 7 E: 1 Q: 0 G: 2 H: 0 I: 4 L: 1 K: 3 M: 0 F: 0 P: 1 S: 2 T: 4 W: 1 Y: 1 V: 1

Length

38

Formula

C176H295N57O53S7

Mass

4282.05

PI

8.68

Net Charge

+5

Boman Index

5.47

Hydrophobicity

-0.239

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antifungal	dbAMP classified under the Anti-fungal function class.