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Peptide record

TPDB49816

Antifungal standard
69 amino acids
Basic Information
3D PDB MODEL
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TPDB49816
Antifungal
Anti-infective peptides
dbAMP Peptipedia
standard
No
A 69-aa standard-residue antifungal peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.
Sequence
APMGSDPPTACCASYTARKLPRNFVVDYYETSSLCSQPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C340H518N88O109S5
HI
S
7742.68
4.56
6
8
26
-2
1.76
-0.404
60.72
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
13200
1.70
27
Residue Composition
number
6
A
3
R
2
N
4
D
4
C
4
E
4
Q
1
G
0
H
0
I
4
L
3
K
1
M
2
F
6
P
8
S
4
T
1
W
5
Y
7
V
Amino Acid Distribution
A: 6 R: 3 N: 2 D: 4 C: 4 E: 4 Q: 4 G: 1 H: 0 I: 0 L: 4 K: 3 M: 1 F: 2 P: 6 S: 8 T: 4 W: 1 Y: 5 V: 7
Chemical Descriptors
69 reviewed residue count
C340H518N88O109S5 sequence-only estimate (linear, free termini)
7742.68 sequence-only estimate (linear, free termini)
4.56 sequence-only estimate (linear, free termini)
-2 sequence-only estimate (linear, free termini)
1.76 sequence-only estimate (linear, free termini)
-0.404 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antifungal
dbAMP classified under the Anti-fungal function class.