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Peptide record

TPDB49698

Antifungal standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB49698
Antifungal
Anti-infective peptides
CAFPdb
standard
No
A 10-aa standard-residue antifungal peptide sequence curated from CAFPdb, with an available 3D structural model.
Sequence
VPFLQPKVMD
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C55H88N12O14S1
ARNCEGHISTWY
PV
1173.44
6.75
1
1
5
-0
0.15
0.280
97.00
Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
1
Residue Composition
number
0
A
0
R
0
N
1
D
0
C
0
E
1
Q
0
G
0
H
0
I
1
L
1
K
1
M
1
F
2
P
0
S
0
T
0
W
0
Y
2
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 1 C: 0 E: 0 Q: 1 G: 0 H: 0 I: 0 L: 1 K: 1 M: 1 F: 1 P: 2 S: 0 T: 0 W: 0 Y: 0 V: 2
Chemical Descriptors
10 reviewed residue count
C55H88N12O14S1 sequence-only estimate (linear, free termini)
1173.44 sequence-only estimate (linear, free termini)
6.75 sequence-only estimate (linear, free termini)
-0 sequence-only estimate (linear, free termini)
0.15 sequence-only estimate (linear, free termini)
0.280 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

CAFPdb