TPDB

3D PDB MODEL

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TPDB ID TPDB49628

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

CAFPdb Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 48-aa standard natural antifungal peptide sequence curated from CAFPdb and Peptipedia, with an available 3D structural model.

Sequence

ARVCMGKSQHHSFPCISDRLCSNECVKEDGGWTAGYCHLRYCRCQKAC

FASTA

>TPDB49628|Antifungal|length=48
ARVCMGKSQHHSFPCISDRLCSNECVKEDGGWTAGYCHLRYCRCQKAC

Formula C225H351N73O67S9

Absent Amino Acids

Common Amino Acids C

Mass 5439.25

PI 8.10

Basic Residues 10

Acidic Residues 4

Hydrophobic Residues 13

Net Charge +3

Boman Index 9.51

Hydrophobicity -0.496

Aliphatic Index 42.71

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8980

Absorbance 280nm 165.10

Polar Residues 18

number

3

A

4

R

1

N

2

D

8

C

2

E

2

Q

4

G

3

H

1

I

2

L

3

K

1

M

1

F

1

P

4

S

1

T

1

W

2

Y

2

V

Amino Acid Distribution

A: 3 R: 4 N: 1 D: 2 C: 8 E: 2 Q: 2 G: 4 H: 3 I: 1 L: 2 K: 3 M: 1 F: 1 P: 1 S: 4 T: 1 W: 1 Y: 2 V: 2

Length

48

Formula

C225H351N73O67S9

Mass

5439.25

PI

8.10

Net Charge

+3

Boman Index

9.51

Hydrophobicity

-0.496

Evidence 1 Activity

Source & Reference

Database Source CAFPdb