TPDB

3D PDB MODEL

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TPDB ID TPDB49490

Activity

Antifungal

Activity_category_statistics

Anti-infective peptides

Database_Source

Antifungipept CAFPdb dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 33-aa standard natural antifungal peptide sequence curated from Antifungipept, CAFPdb, dbAMP, and other sources, with an available 3D structural model.

Sequence

VDPDVRAYCKHQCMSTRGDQARKICESVCMRQD

FASTA

>TPDB49490|Antifungal|length=33
VDPDVRAYCKHQCMSTRGDQARKICESVCMRQD

Formula C153H254N52O51S6

Absent Amino Acids NLFW

Common Amino Acids RDC

Mass 3830.38

PI 7.85

Basic Residues 7

Acidic Residues 5

Hydrophobic Residues 9

Net Charge +1

Boman Index 12.92

Hydrophobicity -0.852

Aliphatic Index 44.24

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 1740

Absorbance 280nm 45.43

Polar Residues 11

number

2

A

4

R

0

N

4

D

4

C

1

E

3

Q

1

G

1

H

1

I

0

L

2

K

2

M

0

F

1

P

2

S

1

T

0

W

1

Y

3

V

Amino Acid Distribution

A: 2 R: 4 N: 0 D: 4 C: 4 E: 1 Q: 3 G: 1 H: 1 I: 1 L: 0 K: 2 M: 2 F: 0 P: 1 S: 2 T: 1 W: 0 Y: 1 V: 3

Length

33

Formula

C153H254N52O51S6

Mass

3830.38

PI

7.85

Net Charge

+1

Boman Index

12.92

Hydrophobicity

-0.852

Evidence 1 Activity

Source & Reference

Database Source dbAMP CAFPdb Antifungipept

Other

Source Activity Label	Source Definition
Antifungal	dbAMP classified under the Anti-fungal function class.