TPDB

3D PDB MODEL

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TPDB ID TPDB48450

Activity

Antiparasitic

Activity_category_statistics

Anti-infective peptides

Database_Source

i2APP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 81-aa standard natural antiparasitic peptide sequence curated from i2APP and Peptipedia, with an available 3D structural model.

Sequence

MKQVCILLAVLLCTAAVADAMVFAYAPTCARCKSIGARYCGYGYLNRKGVSCDGQTTINSCEDCKRKFGRCSDGFITECEF

FASTA

>TPDB48450|Antiparasitic|length=81
MKQVCILLAVLLCTAAVADAMVFAYAPTCARCKSIGARYCGYGYLNRKGVSCDGQTTINSCEDCKRKFGRCSDGFITECEF

Formula C378H603N105O113S12

Absent Amino Acids HW

Common Amino Acids C

Mass 8811.30

PI 7.95

Basic Residues 10

Acidic Residues 7

Hydrophobic Residues 33

Net Charge +3

Boman Index 7.36

Hydrophobicity 0.215

Aliphatic Index 72.35

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6585

Absorbance 280nm 74.73

Polar Residues 27

number

9

A

5

R

2

N

4

D

10

C

3

E

2

Q

7

G

0

H

4

I

5

L

5

K

2

M

4

F

1

P

4

S

5

T

0

W

4

Y

5

V

Amino Acid Distribution

A: 9 R: 5 N: 2 D: 4 C: 10 E: 3 Q: 2 G: 7 H: 0 I: 4 L: 5 K: 5 M: 2 F: 4 P: 1 S: 4 T: 5 W: 0 Y: 4 V: 5

Length

81

Formula

C378H603N105O113S12

Mass

8811.30

PI

7.95

Net Charge

+3

Boman Index

7.36

Hydrophobicity

0.215

Evidence 1 Activity

Source & Reference

Database Source NA