TPDB

3D PDB MODEL

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TPDB ID TPDB48408

Activity

Antiparasitic

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0

Sequence_Type

standard

Has_Modification No

Description A 15-aa standard natural antiparasitic peptide sequence curated from dbAMP 3.0, with an available 3D structural model.

Sequence

LSGRARDDVRAWATR

FASTA

>TPDB48408|Antiparasitic|length=15
LSGRARDDVRAWATR

Formula C72H120N28O22

Absent Amino Acids NCEQHIKMFPY

Common Amino Acids R

Mass 1729.92

PI 11.93

Basic Residues 4

Acidic Residues 2

Hydrophobic Residues 6

Net Charge +2

Boman Index 3.13

Hydrophobicity -0.960

Aliphatic Index 65.33

Half Life

Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min

Extinction Coefficient Cystines 5500

Absorbance 280nm 317.93

Polar Residues 2

number

3

A

4

R

0

N

2

D

0

C

0

E

0

Q

1

G

0

H

0

I

1

L

0

K

0

M

0

F

0

P

1

S

1

T

1

W

0

Y

1

V

Amino Acid Distribution

A: 3 R: 4 N: 0 D: 2 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 0 L: 1 K: 0 M: 0 F: 0 P: 0 S: 1 T: 1 W: 1 Y: 0 V: 1

Length

15

Formula

C72H120N28O22

Mass

1729.92

PI

11.93

Net Charge

+2

Boman Index

3.13

Hydrophobicity

-0.960

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiparasitic	dbAMP 3.0 classified under the Anti-parasitic function class.