TPDB

3D PDB MODEL

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TPDB ID TPDB45509

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0

Sequence_Type

standard

Has_Modification No

Description A 40-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, with an available 3D structural model.

Sequence

GRHIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTT

FASTA

>TPDB45509|Antiviral|length=40
GRHIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTT

Formula C203H312N48O62S2

Absent Amino Acids NQKW

Common Amino Acids D

Mass 4481.11

PI 3.79

Basic Residues 3

Acidic Residues 7

Hydrophobic Residues 19

Net Charge -5

Boman Index 7.27

Hydrophobicity 0.280

Aliphatic Index 109.50

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 4470

Absorbance 280nm 99.75

Polar Residues 8

number

2

A

2

R

0

N

6

D

1

C

1

E

0

Q

2

G

1

H

5

I

2

L

0

K

1

M

1

F

4

P

1

S

3

T

0

W

3

Y

5

V

Amino Acid Distribution

A: 2 R: 2 N: 0 D: 6 C: 1 E: 1 Q: 0 G: 2 H: 1 I: 5 L: 2 K: 0 M: 1 F: 1 P: 4 S: 1 T: 3 W: 0 Y: 3 V: 5

Length

40

Formula

C203H312N48O62S2

Mass

4481.11

PI

3.79

Net Charge

-5

Boman Index

7.27

Hydrophobicity

0.280

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.