TPDB

3D PDB MODEL

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TPDB ID TPDB45499

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0

Sequence_Type

standard

Has_Modification No

Description A 195-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, with an available 3D structural model.

Sequence

MAFVLSLLMALVLVSYGPGGSLGCDLSQNHVLVGRQNLRLLGQMRRLSPRFCLQDRKDFAFPQEMVEGGQLQEAQAISVLHEMLQQTFNLFHTERSSAAWDTTLLEQLRTGLHQQLDDLDACLGQVMGEEDSALGRTGPTLAVKRYFQGIHVYLKEKEYSDCAWEIVRVEIMRSLSSSTSLQERLRMMDGDLNSP

FASTA

>TPDB45499|Antiviral|length=195
MAFVLSLLMALVLVSYGPGGSLGCDLSQNHVLVGRQNLRLLGQMRRLSPRFCLQDRKDFAFPQEMVEGGQLQEAQAISVLHEMLQQTFNLFHTERSSAAWDTTLLEQLRTGLHQQLDDLDACLGQVMGEEDSALGRTGPTLAVKRYFQGIHVYLKEKEYSDCAWEIVRVEIMRSLSSSTSLQERLRMMDGDLNSP

Formula C959H1535N273O292S13

Absent Amino Acids

Common Amino Acids L

Mass 21978.17

PI 5.22

Basic Residues 23

Acidic Residues 24

Hydrophobic Residues 80

Net Charge -6

Boman Index 38.42

Hydrophobicity -0.181

Aliphatic Index 93.49

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 17210

Absorbance 280nm 78.30

Polar Residues 52

number

11

A

14

R

4

N

11

D

4

C

13

E

16

Q

15

G

5

H

4

I

31

L

4

K

9

M

7

F

5

P

16

S

8

T

2

W

4

Y

12

V

Amino Acid Distribution

A: 11 R: 14 N: 4 D: 11 C: 4 E: 13 Q: 16 G: 15 H: 5 I: 4 L: 31 K: 4 M: 9 F: 7 P: 5 S: 16 T: 8 W: 2 Y: 4 V: 12

Length

195

Formula

C959H1535N273O292S13

Mass

21978.17

PI

5.22

Net Charge

-6

Boman Index

38.42

Hydrophobicity

-0.181

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.