TPDB

3D PDB MODEL

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TPDB ID TPDB45485

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0

Sequence_Type

standard

Has_Modification No

Description A 162-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, with an available 3D structural model.

Sequence

CNHLRPQDATFSRDSLQPLQDMAPSPPQLCPQHNAPCSFNYTILDTNNARQADKTTHDILQHLFTILSSSSTPDHWIDSQRQSLLNQIQRYAQHLQQCLADSDTRSRTRWPRNLHLTINKHFSCLHTFLHDNHYSACAWDHVRLRARAWFLHIHDLTGNTRT

FASTA

>TPDB45485|Antiviral|length=162
CNHLRPQDATFSRDSLQPLQDMAPSPPQLCPQHNAPCSFNYTILDTNNARQADKTTHDILQHLFTILSSSSTPDHWIDSQRQSLLNQIQRYAQHLQQCLADSDTRSRTRWPRNLHLTINKHFSCLHTFLHDNHYSACAWDHVRLRARAWFLHIHDLTGNTRT

Formula C823H1261N259O244S7

Absent Amino Acids E

Common Amino Acids L

Mass 18912.07

PI 8.05

Basic Residues 29

Acidic Residues 13

Hydrophobic Residues 52

Net Charge +3

Boman Index 28.82

Hydrophobicity -0.756

Aliphatic Index 71.17

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 26845

Absorbance 280nm 141.95

Polar Residues 61

number

11

A

13

R

10

N

13

D

6

C

0

E

14

Q

1

G

14

H

7

I

19

L

2

K

1

M

6

F

9

P

14

S

14

T

4

W

3

Y

1

V

Amino Acid Distribution

A: 11 R: 13 N: 10 D: 13 C: 6 E: 0 Q: 14 G: 1 H: 14 I: 7 L: 19 K: 2 M: 1 F: 6 P: 9 S: 14 T: 14 W: 4 Y: 3 V: 1

Length

162

Formula

C823H1261N259O244S7

Mass

18912.07

PI

8.05

Net Charge

+3

Boman Index

28.82

Hydrophobicity

-0.756

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.