TPDB

3D PDB MODEL

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TPDB ID TPDB45475

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0

Sequence_Type

standard

Has_Modification No

Description A 53-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, with an available 3D structural model.

Sequence

GPMAFDRPGRCRDVGGSGICAIAAANCQGDYDCEYGYKCCPVGCGRECMPIAE

FASTA

>TPDB45475|Antiviral|length=53
GPMAFDRPGRCRDVGGSGICAIAAANCQGDYDCEYGYKCCPVGCGRECMPIAE

Formula C227H352N68O74S10

Absent Amino Acids HLTW

Common Amino Acids G

Mass 5538.30

PI 4.45

Basic Residues 5

Acidic Residues 7

Hydrophobic Residues 17

Net Charge -2

Boman Index 10.09

Hydrophobicity -0.166

Aliphatic Index 44.34

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 4970

Absorbance 280nm 89.74

Polar Residues 14

number

6

A

4

R

1

N

4

D

8

C

3

E

1

Q

9

G

0

H

3

I

0

L

1

K

2

M

1

F

4

P

1

S

0

T

0

W

3

Y

2

V

Amino Acid Distribution

A: 6 R: 4 N: 1 D: 4 C: 8 E: 3 Q: 1 G: 9 H: 0 I: 3 L: 0 K: 1 M: 2 F: 1 P: 4 S: 1 T: 0 W: 0 Y: 3 V: 2

Length

53

Formula

C227H352N68O74S10

Mass

5538.30

PI

4.45

Net Charge

-2

Boman Index

10.09

Hydrophobicity

-0.166

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.