TPDB

3D PDB MODEL

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TPDB ID TPDB45356

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 85-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MYIIVVYDVSVERVNRVKKFLRQHLHWVQNSVFEGEVTLAEFERIKAGIGELIDGDEDSVVIYKLRSMPKREVMGVEKNPIEDII

FASTA

>TPDB45356|Antiviral|length=85
MYIIVVYDVSVERVNRVKKFLRQHLHWVQNSVFEGEVTLAEFERIKAGIGELIDGDEDSVVIYKLRSMPKREVMGVEKNPIEDII

Formula C447H717N119O129S3

Absent Amino Acids C

Common Amino Acids V

Mass 9918.51

PI 5.19

Basic Residues 14

Acidic Residues 15

Hydrophobic Residues 39

Net Charge -3

Boman Index 29.33

Hydrophobicity -0.105

Aliphatic Index 110.94

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 9970

Absorbance 280nm 100.52

Polar Residues 13

number

2

A

6

R

3

N

5

D

0

C

10

E

2

Q

5

G

2

H

9

I

5

L

6

K

3

M

3

F

2

P

4

S

1

T

1

W

3

Y

13

V

Amino Acid Distribution

A: 2 R: 6 N: 3 D: 5 C: 0 E: 10 Q: 2 G: 5 H: 2 I: 9 L: 5 K: 6 M: 3 F: 3 P: 2 S: 4 T: 1 W: 1 Y: 3 V: 13

Length

85

Formula

C447H717N119O129S3

Mass

9918.51

PI

5.19

Net Charge

-3

Boman Index

29.33

Hydrophobicity

-0.105

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.