TPDB

3D PDB MODEL

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TPDB ID TPDB45354

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 91-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MQYKINMYAIVVYDVNVSRQNQIREFLRKYLYHVQRSVFEGEISPSSLYYMKKILQSYIGETDSLIIYVLRDKSCLMDKIVLGEDKDLQIY

FASTA

>TPDB45354|Antiviral|length=91
MQYKINMYAIVVYDVNVSRQNQIREFLRKYLYHVQRSVFEGEISPSSLYYMKKILQSYIGETDSLIIYVLRDKSCLMDKIVLGEDKDLQIY

Formula C496H782N124O142S5

Absent Amino Acids W

Common Amino Acids IY

Mass 10914.71

PI 8.51

Basic Residues 13

Acidic Residues 11

Hydrophobic Residues 44

Net Charge +1

Boman Index 15.25

Hydrophobicity -0.171

Aliphatic Index 108.02

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 14900

Absorbance 280nm 136.51

Polar Residues 29

number

1

A

5

R

3

N

6

D

1

C

5

E

6

Q

3

G

1

H

10

I

9

L

7

K

4

M

2

F

1

P

8

S

1

T

0

W

10

Y

8

V

Amino Acid Distribution

A: 1 R: 5 N: 3 D: 6 C: 1 E: 5 Q: 6 G: 3 H: 1 I: 10 L: 9 K: 7 M: 4 F: 2 P: 1 S: 8 T: 1 W: 0 Y: 10 V: 8

Length

91

Formula

C496H782N124O142S5

Mass

10914.71

PI

8.51

Net Charge

+1

Boman Index

15.25

Hydrophobicity

-0.171

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.