TPDB

3D PDB MODEL

Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.

TPDB ID TPDB45351

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 91-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MKVLVSFEIKFKTNKEKIISILKHFGFRRMQENLYFGDVEYDELYAMQSDIMENIREYDSILTIPICKSCYLKLNVFGRNLSFKDELYKIF

FASTA

>TPDB45351|Antiviral|length=91
MKVLVSFEIKFKTNKEKIISILKHFGFRRMQENLYFGDVEYDELYAMQSDIMENIREYDSILTIPICKSCYLKLNVFGRNLSFKDELYKIF

Formula C506H786N122O139S6

Absent Amino Acids W

Common Amino Acids IK

Mass 10994.90

PI 8.20

Basic Residues 15

Acidic Residues 13

Hydrophobic Residues 42

Net Charge +1

Boman Index 17.10

Hydrophobicity -0.156

Aliphatic Index 95.27

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 9065

Absorbance 280nm 82.45

Polar Residues 23

number

1

A

4

R

5

N

5

D

2

C

8

E

2

Q

3

G

1

H

10

I

9

L

10

K

4

M

8

F

1

P

6

S

2

T

0

W

6

Y

4

V

Amino Acid Distribution

A: 1 R: 4 N: 5 D: 5 C: 2 E: 8 Q: 2 G: 3 H: 1 I: 10 L: 9 K: 10 M: 4 F: 8 P: 1 S: 6 T: 2 W: 0 Y: 6 V: 4

Length

91

Formula

C506H786N122O139S6

Mass

10994.90

PI

8.20

Net Charge

+1

Boman Index

17.10

Hydrophobicity

-0.156

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.