TPDB

3D PDB MODEL

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TPDB ID TPDB45342

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 87-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MYVIMVYDVNQRRINKVLNTARKYLEWIQNSVLEGEITEAKFEMLKREIEIIINEEEDSVIFYIMRTTKYSERQILGIEKNKREQIL

FASTA

>TPDB45342|Antiviral|length=87
MYVIMVYDVNQRRINKVLNTARKYLEWIQNSVLEGEITEAKFEMLKREIEIIINEEEDSVIFYIMRTTKYSERQILGIEKNKREQIL

Formula C474H770N126O140S4

Absent Amino Acids CHP

Common Amino Acids EI

Mass 10602.33

PI 5.36

Basic Residues 14

Acidic Residues 15

Hydrophobic Residues 39

Net Charge -1

Boman Index 30.09

Hydrophobicity -0.418

Aliphatic Index 107.47

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12950

Absorbance 280nm 122.14

Polar Residues 22

number

2

A

7

R

6

N

2

D

0

C

13

E

4

Q

2

G

0

H

13

I

6

L

7

K

4

M

2

F

0

P

3

S

4

T

1

W

5

Y

6

V

Amino Acid Distribution

A: 2 R: 7 N: 6 D: 2 C: 0 E: 13 Q: 4 G: 2 H: 0 I: 13 L: 6 K: 7 M: 4 F: 2 P: 0 S: 3 T: 4 W: 1 Y: 5 V: 6

Length

87

Formula

C474H770N126O140S4

Mass

10602.33

PI

5.36

Net Charge

-1

Boman Index

30.09

Hydrophobicity

-0.418

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.