TPDB

3D PDB MODEL

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TPDB ID TPDB45334

Activity

Antiviral

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP 3.0 DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 96-aa standard natural antiviral peptide sequence curated from dbAMP 3.0, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MLIIVTYDVSTETRAGRKRLRRVAKLCESIGQRVQKSVFECRINLMQYEELERRLLSEIDEQEDNLRLYRLTEPAELHVKEYGNFKAIDFEGPLTI

FASTA

>TPDB45334|Antiviral|length=96
MLIIVTYDVSTETRAGRKRLRRVAKLCESIGQRVQKSVFECRINLMQYEELERRLLSEIDEQEDNLRLYRLTEPAELHVKEYGNFKAIDFEGPLTI

Formula C500H817N143O151S4

Absent Amino Acids W

Common Amino Acids E

Mass 11376.09

PI 5.81

Basic Residues 17

Acidic Residues 17

Hydrophobic Residues 38

Net Charge -1

Boman Index 34.50

Hydrophobicity -0.481

Aliphatic Index 99.48

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6085

Absorbance 280nm 53.49

Polar Residues 22

number

4

A

11

R

3

N

4

D

2

C

13

E

4

Q

4

G

1

H

7

I

12

L

5

K

2

M

3

F

2

P

4

S

5

T

0

W

4

Y

6

V

Amino Acid Distribution

A: 4 R: 11 N: 3 D: 4 C: 2 E: 13 Q: 4 G: 4 H: 1 I: 7 L: 12 K: 5 M: 2 F: 3 P: 2 S: 4 T: 5 W: 0 Y: 4 V: 6

Length

96

Formula

C500H817N143O151S4

Mass

11376.09

PI

5.81

Net Charge

-1

Boman Index

34.50

Hydrophobicity

-0.481

Evidence 1 Activity

Source & Reference

Database Source dbAMP 3.0 DRAMP

Other

Source Activity Label	Source Definition
Antiviral	dbAMP 3.0 classified under the Anti-viral function class.